Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l16f
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3... 45 8e-06
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 29 0.56
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 28 0.98
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 2.3
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 2.3
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 3.0
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 5.2
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 26 5.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.1
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 25 9.1
>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
3|||Manual
Length = 227
Score = 45.2 bits (102), Expect = 8e-06
Identities = 25/71 (35%), Positives = 42/71 (59%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KT VLNPF K D + ++ DTD+AGPI G ++HFG++YG++
Sbjct: 71 IKQKTTHVLNPF----KHVDVH-IMDDTDMAGPILFCLLFSTFLSLHG-RSHFGYIYGIA 124
Query: 599 MMSVILMYFLL 631
++ + ++F+L
Sbjct: 125 LLGSLSLHFVL 135
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 29.1 bits (62), Expect = 0.56
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 242 TDQQNYSFDQTQGTIPANNNQYYNPNFFTPAPIPGEAT 355
T+ QN + D++Q T N YNP TP PIP AT
Sbjct: 497 TESQNET-DESQNT----ENVDYNPQTHTPVPIPTTAT 529
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 0.98
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 582 NPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFAS 475
+P W++LPD R + R+N M A KKF S
Sbjct: 115 HPLWSILPDEVRNSLLERKNVM--AFDYEQVKKFVS 148
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 206 TTAQTLDFQTFPTDQQNYSFDQTQGTIPANNN 301
T Q + +T P+ +N FD T G AN+N
Sbjct: 1006 THVQHPNSETIPSSTENQYFDTTSGAFEANSN 1037
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -3
Query: 528 QNAMGPAMSVSLSKKFASSALDCPWKGLRTANVFSRI 418
++ + P+ L K ++++ D PWK T N+ S++
Sbjct: 203 ESPINPSSITGLGKDWSTAFEDIPWKNPNTENLTSQV 239
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 421 NSIRVYFKFVQEGWLIKLI 365
N IR YF V++GW +KLI
Sbjct: 583 NEIRSYFPQVRDGWDLKLI 601
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -1
Query: 242 WEKFENLKSGQLFQKYLMNQKNNSDCRFAFAMHIHW 135
W + L + +LF+KY +K + F HW
Sbjct: 291 WNTYGELDNSELFRKYGFTKKKGTPHDFVLIKKEHW 326
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 202 WNNCPDFRFSNFSHGSTELF 261
W+N PD+ F F H LF
Sbjct: 1137 WSNPPDYDFDRFPHALLALF 1156
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 620 TSI*QTSLTVHTQTQNGLYCLIEKGK 543
T + +++ +VH QNGLYC I+K K
Sbjct: 170 TRLCRSASSVHISYQNGLYC-IDKDK 194
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 215 QTLDFQTFPTDQQNYSFDQTQGTIPANNNQYYNPN 319
Q+ Q++ + Q F Q P + QYY P+
Sbjct: 371 QSQPVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPS 405
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 172 LTVALRLPCIFIGIVIVSHEEAVKQSCLS*FRLCVILLNIYL*YFKNKFQPQLHQ 8
LTV+ + FI I++V V C + L + LLN++L + KF P + Q
Sbjct: 38 LTVSGLIALFFIRILLVRGWYIV---C---YTLAIYLLNLFLAFLTPKFDPSVEQ 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,117
Number of Sequences: 5004
Number of extensions: 51642
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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