Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l16f
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0634 + 9986742-9987512                                           35   0.062
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125     27   9.4  

>03_02_0634 + 9986742-9987512
          Length = 256

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +2

Query: 416 RILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGL 595
           +I  KTL++L+P      AD +  L  D D++GP             +G K HFG V G 
Sbjct: 97  QIWRKTLSILHPLRS---ADPS--LHADADLSGPFLFLLSFGLFQLLAG-KFHFGIVLGW 150

Query: 596 SMMSVILMYFLLS 634
             ++ + +YF+ S
Sbjct: 151 VTVASLFLYFVFS 163


>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
          Length = 790

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 60  NRITHKRN*LRQDCFTASSWLTITIPMNMHGKRKA 164
           +R++H R  LR+     SS  T T   + HG+R+A
Sbjct: 15  SRLSHSRPLLRRAGSACSSLTTTTTSQHRHGRRRA 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,054,583
Number of Sequences: 37544
Number of extensions: 304103
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)