Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l16f
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 28   5.5  
SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1)            27   9.7  
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)                  27   9.7  

>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 11/140 (7%)
 Frame = +2

Query: 248 QQNYSFDQTQGTIPANNNQYYNPNFFTPAPIPGEATSXXXXXXXXXXXXXXXXXXXRILE 427
           QQ Y ++Q         N YY+PN       PG +                      +LE
Sbjct: 119 QQGYDYNQQNQYDQHAGNYYYDPNVHQQQDYPGNSFQMGGVKQVDEAHTSGFEDEPPLLE 178

Query: 428 -----------KTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAH 574
                      KTL+VL+P     K  D + ++ DTD+ GP+             G K  
Sbjct: 179 ELGLNLDHIWQKTLSVLHPL----KPTDQH-IMDDTDLGGPLLFCLAFGGILLLHG-KVT 232

Query: 575 FGFVYGLSMMSVILMYFLLS 634
           FG++YG S++  I MY +L+
Sbjct: 233 FGYIYGYSLLGCIAMYAILN 252


>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 233 TFPTDQQNYSFDQTQGTIPANNNQYYNPNFFTPAPIPGE 349
           T P   +      T GT P  N+Q  + N +  AP+  E
Sbjct: 274 TAPVQNEQEGSGDTDGTTPVQNDQEVSGNTYDTAPVQNE 312


>SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1)
          Length = 213

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 576 KWALLPDRKRQTAKARQNAMGPAMSVS-LSKKFAS 475
           KW  LP+R+R    A Q A  PA + S L+++  S
Sbjct: 15  KWRSLPERQRNPTAAEQAAQEPARTPSALAERITS 49


>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
          Length = 1062

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 576 KWALLPDRKRQTAKARQNAMGPAMSVS-LSKKFAS 475
           KW  LP+R+R    A Q A  PA + S L+++  S
Sbjct: 740 KWRSLPERQRNPTAAEQAAQEPARTPSALAERITS 774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,795,539
Number of Sequences: 59808
Number of extensions: 360054
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)