Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l16f
(635 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC024737-1|AAH24737.1| 257|Homo sapiens Yip1 domain family, mem... 42 0.002
BC014253-1|AAH14253.1| 257|Homo sapiens Yip1 domain family, mem... 42 0.002
BC007829-1|AAH07829.1| 257|Homo sapiens Yip1 domain family, mem... 42 0.002
AY640934-1|AAV51260.1| 265|Homo sapiens FINGER5-like variant I ... 42 0.002
AY640928-1|AAV51259.1| 257|Homo sapiens FINGER5 variant C protein. 42 0.002
AY640927-1|AAV51258.1| 257|Homo sapiens FINGER5 variant B protein. 42 0.002
AY640926-1|AAV51257.1| 257|Homo sapiens FINGER5 variant A protein. 42 0.002
AY640925-1|AAV51256.1| 257|Homo sapiens FINGER5 protein. 42 0.002
AY358863-1|AAQ89222.1| 257|Homo sapiens SB140 protein. 42 0.002
AK223515-1|BAD97235.1| 257|Homo sapiens golgi membrane protein ... 42 0.002
AK054576-1|BAB70763.1| 257|Homo sapiens protein ( Homo sapiens ... 42 0.002
AF140225-1|AAG48521.1| 257|Homo sapiens unknown protein. 40 0.007
>BC024737-1|AAH24737.1| 257|Homo sapiens Yip1 domain family, member
5 protein.
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>BC014253-1|AAH14253.1| 257|Homo sapiens Yip1 domain family, member
5 protein.
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>BC007829-1|AAH07829.1| 257|Homo sapiens Yip1 domain family, member
5 protein.
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>AY640934-1|AAV51260.1| 265|Homo sapiens FINGER5-like variant I
protein.
Length = 265
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>AY640928-1|AAV51259.1| 257|Homo sapiens FINGER5 variant C protein.
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>AY640927-1|AAV51258.1| 257|Homo sapiens FINGER5 variant B protein.
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>AY640926-1|AAV51257.1| 257|Homo sapiens FINGER5 variant A protein.
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>AY640925-1|AAV51256.1| 257|Homo sapiens FINGER5 protein.
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>AY358863-1|AAQ89222.1| 257|Homo sapiens SB140 protein.
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>AK223515-1|BAD97235.1| 257|Homo sapiens golgi membrane protein
SB140 variant protein.
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>AK054576-1|BAB70763.1| 257|Homo sapiens protein ( Homo sapiens
cDNA FLJ30014 fis, clone 3NB692000330, weakly similar to
YIP1 PROTEIN. ).
Length = 257
Score = 41.5 bits (93), Expect = 0.002
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG+S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLAFGATLLLAG-KIQFGYVYGIS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
>AF140225-1|AAG48521.1| 257|Homo sapiens unknown protein.
Length = 257
Score = 39.9 bits (89), Expect = 0.007
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +2
Query: 419 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 598
I +KTL VL+P K D + ++ +TD+AGP+ +G K FG+VYG S
Sbjct: 103 IWQKTLTVLHPL----KVADGS-IMNETDLAGPMVFCLDLAATLLLAG-KIQFGYVYGSS 156
Query: 599 MMSVILMYFLLS 634
+ + M+ LL+
Sbjct: 157 AIGCLGMFCLLN 168
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,005,817
Number of Sequences: 237096
Number of extensions: 1746123
Number of successful extensions: 3232
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3232
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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