Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l16f
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical p... 42 3e-04
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 33 0.13
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 33 0.13
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 33 0.13
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 28 0.25
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 4.9
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 4.9
U70849-1|AAF99923.1| 381|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical pr... 27 8.5
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 27 8.5
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 27 8.5
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ... 27 8.5
>Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical
protein F32D8.14 protein.
Length = 261
Score = 42.3 bits (95), Expect = 3e-04
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Frame = +2
Query: 248 QQNYSFDQTQGTIPANNNQYYNPNFFTPA-PIPGEATSXXXXXXXXXXXXXXXXXXXRIL 424
QQN + Q Q Q + PN T A P G A I
Sbjct: 49 QQNQQYQQPQTNY--YGGQMFMPNNGTGAIPNAGVAADGEDYENEPPLLEELGINFSHIK 106
Query: 425 EKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLSMM 604
EKT+AVLNP G + + ++ D D+AGP+ G K FGF+YG+ +
Sbjct: 107 EKTIAVLNPT-GSATVE----VIADQDLAGPLVFCLLFGAALLLHG-KLSFGFIYGVGGL 160
Query: 605 SVILMYFLLS 634
+ +Y L++
Sbjct: 161 GCVGIYALMN 170
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -2
Query: 406 YFKFVQEGWLIKLIRLTCSFSRYGSRCKKIWIVVLVVVCWNCALRLIKGIVLL 248
Y K ++ W++K + C + G+ +W V++ + +NC L I I+++
Sbjct: 126 YSKDIKFNWILKYLLSKCGEEQRGTTAGCMWTVMIAWIGYNCVLVTIAAILVI 178
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -2
Query: 406 YFKFVQEGWLIKLIRLTCSFSRYGSRCKKIWIVVLVVVCWNCALRLIKGIVLL 248
Y K ++ W++K + C + G+ +W V++ + +NC L I I+++
Sbjct: 126 YSKDIKFNWILKYLLSKCGEEQRGTTAGCMWTVMIAWIGYNCVLVTIAAILVI 178
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -2
Query: 406 YFKFVQEGWLIKLIRLTCSFSRYGSRCKKIWIVVLVVVCWNCALRLIKGIVLL 248
Y K ++ W++K + C + G+ +W V++ + +NC L I I+++
Sbjct: 126 YSKDIKFNWILKYLLSKCGEEQRGTTAGCMWTVMIAWIGYNCVLVTIAAILVI 178
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 28.3 bits (60), Expect(2) = 0.25
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 203 GTTAQTLDFQTFPTDQQNYSFDQTQGTIPANNNQYYNPN 319
G+T + P +Q Y QG N NQY NPN
Sbjct: 153 GSTGNMMYNNQDPYNQMQYGGYNQQGNQYQNQNQYQNPN 191
Score = 23.0 bits (47), Expect(2) = 0.25
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 293 NNNQYYNPNFFTP 331
N NQY N N++ P
Sbjct: 198 NQNQYQNQNYYNP 210
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 200 FGTTAQTLDFQTFPTDQQNYSFDQTQGTIPANNNQYYNPNF 322
FG ++ DFQ + +F Q Q + NN+ +NPNF
Sbjct: 171 FGQPSELPDFQPNNNFKYGNNFGQNQNSNNNNNDFNWNPNF 211
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 200 FGTTAQTLDFQTFPTDQQNYSFDQTQGTIPANNNQYYNPNF 322
FG ++ DFQ + +F Q Q + NN+ +NPNF
Sbjct: 171 FGQPSELPDFQPNNNFKYGNNFGQNQNSNNNNNDFNWNPNF 211
>U70849-1|AAF99923.1| 381|Caenorhabditis elegans Hypothetical
protein F29B9.8 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 272 SDQRNSSVDPWEKFENLKSGQLFQKYLMNQKNNSDCRFAFAMHIHWD 132
S + N +V W+K+ G++ QKY Q D F+ ++ D
Sbjct: 132 SPRANDTVTDWQKYAVDGFGEILQKYTTYQVYTKDQLFSIVSYVAGD 178
>Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical
protein F36F2.2 protein.
Length = 290
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 581 TQNGLYCLIEKGKLPRLGRMLWDQQC 504
T+ +Y IE K +G +WDQQC
Sbjct: 237 TETSIYMYIEMDK-QNVGEFVWDQQC 261
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 251 VDPW-EKFENLKSGQLFQKYLMNQKNNSDCRFAFAMHIHWDC 129
+DPW E+ N+++ + + ++ K + CRFA + DC
Sbjct: 1097 MDPWLERVSNIENNLVKARETIDTKQDDLCRFADILGAERDC 1138
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -3
Query: 633 ESKKYINITDIIDSPYTNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSALDC 460
+ ++I ++ + YT P+W++L Q + R N A ++SL + +A++ C
Sbjct: 599 QQPQHIRMSALHQIIYTQPEWSVLSQIGNQLRQER-NQQVRAFTLSLLRSYANNESPC 655
>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
c protein.
Length = 1651
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -3
Query: 633 ESKKYINITDIIDSPYTNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSALDC 460
+ ++I ++ + YT P+W++L Q + R N A ++SL + +A++ C
Sbjct: 599 QQPQHIRMSALHQIIYTQPEWSVLSQIGNQLRQER-NQQVRAFTLSLLRSYANNESPC 655
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,240,269
Number of Sequences: 27780
Number of extensions: 284805
Number of successful extensions: 762
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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