Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l16f
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00...    32   0.37 
At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related s...    30   1.1  

>At3g26000.1 68416.m03239 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 453

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 190 IKYFWNNCPDFRFSNFSHGSTELF 261
           + +FWNN   F+ S +S+GS  LF
Sbjct: 103 LSFFWNNAMQFQSSGYSYGSESLF 126


>At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related
           similar to Chain A, Crystal Structure Of Human
           Tyrosyl-Dna Phosphodiesterase (Tdp1) [Homo sapiens]
           GI:20150581
          Length = 605

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 467 WIVHGKD*EPLMFSPEFYQGIFQVRPRGVAHQTHSAHL 354
           WI+H K   P+ F     + IF V PRGV    H+A+L
Sbjct: 221 WILH-KPRLPISFGTHHSKAIFLVYPRGVRVVVHTANL 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,395,150
Number of Sequences: 28952
Number of extensions: 260475
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)