Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l15r
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)               32   0.35 
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)                31   0.81 
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         30   1.9  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    30   1.9  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   29   2.5  
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)             29   3.3  
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   28   5.7  
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   5.7  
SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08)                 28   7.6  
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)                     28   7.6  
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)                     28   7.6  
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
          Length = 910

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 332 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 442
           +G HQGH+ N    +GH G V +++H   TRS G  Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814


>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
          Length = 442

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -3

Query: 646 EAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEK 494
           + PI P P  +   + G    L  +++++ND  +A PVE+V+ +Q++ + K
Sbjct: 348 KGPISPDPA-IMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQADADCK 397


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 369 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 548
           G   T AG     GAT   +AT T  GT + G +   G+T+  SS F    +T +TG   
Sbjct: 377 GTTTTQAGGLFGGGATGFGAATGT-TGTGLFGQSTGFGQTSQQSSLFGNKLATSTTGFGA 435

Query: 549 AASLMLIRMWTRGVSCPGTR-GPTWTGDGTMGAST 650
             +  L+ +       P T  G T  G GT GA T
Sbjct: 436 TNTGGLLGL---SAQKPATGFGTTGLGTGTFGAGT 467


>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = +2

Query: 299 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 466
           +R  +G    DHGG    H G   +    R  +GG   DH G  R  G   R     GR 
Sbjct: 2   SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60

Query: 467 SNDHGRNSR 493
             DHG   R
Sbjct: 61  --DHGGTGR 67



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
 Frame = +2

Query: 302 RGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYYDGRIS 469
           R H G    DHGG +   G     H   G + GG   DH G  R  G   R     GR  
Sbjct: 11  RDHGG-TGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGR-- 67

Query: 470 NDHGRNSR 493
            DHG   R
Sbjct: 68  -DHGGTGR 74



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
 Frame = +2

Query: 302 RGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 469
           R H G    DHGG    H G   +    R  +GG   DH G  R  G   R     G   
Sbjct: 60  RDHGG-TGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDH---GGTR 115

Query: 470 NDHGRNSR 493
            DHG   R
Sbjct: 116 RDHGGTRR 123


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +2

Query: 305 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 469
           GH+   SH++ GH     GH    H     N G SH H G++  + G+++    +    S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369

Query: 470 NDHGRNSRLF 499
           ++H     L+
Sbjct: 370 HEHEPKQDLY 379



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 332 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 487
           HG   GH    H     N G SH++ G++    N+  +  + G   ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 592 LTPLVHILININDAASATPVESVEPEQSNVEE 497
           LT   H+LIN+ND     PV S    QS V+E
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +2

Query: 302 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 481
           R H+ R  H HGG  G+  +     GH GG  H H G     G+     + DG     HG
Sbjct: 123 RSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGPGPGHG 179


>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 470 NDHGRNSRLFFNI*LFRFDAFNGGSAGSIVDVNKNVDER 586
           N+ G    L+  I LFR    N    GS  DV K+ DER
Sbjct: 23  NERGNQFSLYQKIDLFRLQCLNEAEEGSGKDVFKSWDER 61


>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
          Length = 567

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
 Frame = +3

Query: 411 ATLGPSATITGLGTMMAGSAMITGETAGFSST---FDCSGSTL-STGVALAASLMLIRMW 578
           AT G     TGLGT   G+       AGF +T   F  +G+   +TG     +       
Sbjct: 76  ATTGFGTATTGLGTSAFGTTGTGFGAAGFGNTGTGFGTTGTGFGTTGTGFGTTGTGFGTI 135

Query: 579 TRGVSCPGTRGPTWTGDGTMGAST 650
             G++  G  G T TG GT G  T
Sbjct: 136 GTGLATAGF-GTTGTGFGTTGFGT 158


>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 439
           A GH   ++H H     H      A  H  G++H H   T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 311  NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 421
            +GR++   GG     H+++    RG  GGVS  H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097


>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +3

Query: 387 AGSATITGATLG----PSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAA 554
           A SA+ TGA LG    P   + G+     G A     T G +    CS ST  TG    A
Sbjct: 612 AWSASTTGARLGQHQPPGQGLVGINHR--GKAWSASTTGGKA----CSAST--TG----A 659

Query: 555 SLMLIRMWTRGVSCPGTRGPTWTGDGT 635
           SL  I  W +G+     RG  W+   T
Sbjct: 660 SLFSINHWGQGLVRINHRGKAWSASTT 686


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 326 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 493
           H HGG +   T+ H   + H+    H HR +     + +      GR ++DH    R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473


>SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08)
          Length = 303

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
 Frame = +3

Query: 429 ATITGLGTMMAGSAMITGETAGFSSTFDCS-GSTLSTGVALAASLMLIRMWTRG-VSCPG 602
           +T+TG     AG     G  AG    F C  G  L    A + +     +W+    SC  
Sbjct: 97  STVTGTTVSPAGCTQTGGAYAGIHCVFSCQPGYKLPENTANSVTCQSTGLWSGSPTSCQK 156

Query: 603 TRGPTWT 623
            R P  T
Sbjct: 157 KRCPALT 163


>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 339

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 369 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSS 503
           G+G +++G   + G  L   A + G+G + AG+ ++   + GF+S
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVV---SRGFTS 243


>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
          Length = 125

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 326 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 418
           HD+GGH       H+  GH+ G+ HD+ G+T
Sbjct: 83  HDYGGHD------HYDGGHHDGMHHDY-GHT 106


>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 311 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 415
           +G  SHD  G   H  +   + GH+G  SHD  G+
Sbjct: 5   DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,048,403
Number of Sequences: 59808
Number of extensions: 222932
Number of successful extensions: 776
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)