Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l15r
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125459-13|AAD12833.1| 605|Caenorhabditis elegans Hypothetical... 36 0.019
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 36 0.033
U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical pr... 34 0.076
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 33 0.18
U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical pr... 33 0.23
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 33 0.23
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 33 0.23
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 30 1.6
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 30 1.6
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.9
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 2.9
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 2.9
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 2.9
AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical... 28 5.0
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 28 5.0
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 28 5.0
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81093-3|CAB03147.1| 610|Caenorhabditis elegans Hypothetical pr... 28 6.6
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 28 6.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical ... 28 6.6
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 28 6.6
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 27 8.7
U42841-9|AAM97955.1| 375|Caenorhabditis elegans Gex interacting... 27 8.7
U42841-5|AAM97959.1| 657|Caenorhabditis elegans Gex interacting... 27 8.7
U42841-4|AAK77640.1| 706|Caenorhabditis elegans Gex interacting... 27 8.7
U42841-3|AAK77638.1| 663|Caenorhabditis elegans Gex interacting... 27 8.7
U42841-2|AAK77639.1| 603|Caenorhabditis elegans Gex interacting... 27 8.7
U42841-1|AAM97958.1| 716|Caenorhabditis elegans Gex interacting... 27 8.7
AL110498-3|CAB54470.1| 846|Caenorhabditis elegans Hypothetical ... 27 8.7
>AF125459-13|AAD12833.1| 605|Caenorhabditis elegans Hypothetical
protein Y25C1A.3 protein.
Length = 605
Score = 36.3 bits (80), Expect = 0.019
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +3
Query: 378 ATMAGSATITGATLGPSATITGLGTMM---AGSAMITGETAGFSSTFDCSGSTLSTGVAL 548
+T AG +T T A G +AT G+ AG + + G ++T GST STGV +
Sbjct: 306 STAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTASTGVTV 365
Query: 549 AAS 557
A+S
Sbjct: 366 ASS 368
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +3
Query: 381 TMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASL 560
T ++T +G+T +A T AG + + G +ST GST+ST + +
Sbjct: 31 TTTVASTSSGSTTASTAAGGSTSTTAAGGSTASTAAGGSTSTTAAGGSTVSTAAGGSTAS 90
Query: 561 MLIRMWTRGVSCPGTRGPTWTGDGT 635
T + G+ T G T
Sbjct: 91 TAAGGSTASTAAGGSTATTAAGGST 115
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 35.5 bits (78), Expect = 0.033
Identities = 32/92 (34%), Positives = 48/92 (52%)
Frame = +3
Query: 375 GATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAA 554
G+T GS+T++ +T G + T + + GS +TGE+ ST GST++ G ++
Sbjct: 907 GSTATGSSTMSAST-GSTDTPGSTESTITGST-VTGESTVSGST----GSTITEGSTISE 960
Query: 555 SLMLIRMWTRGVSCPGTRGPTWTGDGTMGAST 650
S M T GVS G T TG+ T+ ST
Sbjct: 961 STMT----TVGVS----TGSTITGESTVSGST 984
Score = 34.7 bits (76), Expect = 0.058
Identities = 28/92 (30%), Positives = 48/92 (52%)
Frame = +3
Query: 375 GATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAA 554
G+T+ G +T++G+T S+ TG T AGS ++G +A S+ +GS+ S ++
Sbjct: 1021 GSTVTGESTVSGSTASTSSGSTGSST-EAGST-VSGSSA--STVTSSTGSSTSGESTVSG 1076
Query: 555 SLMLIRMWTRGVSCPGTRGPTWTGDGTMGAST 650
S + + G+ G T TG+ T+ ST
Sbjct: 1077 STV--------STVSGSTGSTITGESTVSGST 1100
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +3
Query: 375 GATMAGSATITGATLGPSAT---ITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTG 539
G+T++GS TG+T P +T TG+ T ++GS++ T + S+ S T+STG
Sbjct: 766 GSTVSGSTGSTGSTNNPGSTDSSTTGIST-VSGSSLSTISGSTGSTVSGSSDMTVSTG 822
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 396 ATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLST 536
+TI+G+T+ S T TM AG+ T+G S+ SGS+LST
Sbjct: 1201 STISGSTISGSTGSTESSTMSAGTGSTETSTSGGSTV---SGSSLST 1244
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +3
Query: 375 GATMAGSATITGAT--LGPSATI-TGLGT--MMAGSAMITGETAGFSSTFDCSGSTLST 536
G+T+ G +T++G+T G S + + + T + GS + G TA SS S ST ST
Sbjct: 1123 GSTITGESTVSGSTGSTGESTILESSVSTVSVSTGSTITDGSTASRSSVSTVSASTEST 1181
Score = 29.5 bits (63), Expect = 2.2
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +3
Query: 378 ATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAAS 557
+T+ +T++G+T G + + G+ + + I+ T SS SGST ST +S
Sbjct: 761 STITDGSTVSGST-GSTGSTNNPGSTDSSTTGIS--TVSGSSLSTISGSTGST--VSGSS 815
Query: 558 LMLIRMWTRGVSCPGTRGPTWTGDGTMGAST 650
M + T S PG+ T +G TM ST
Sbjct: 816 DMTVS--TGSTSSPGSTESTVSGASTMSPST 844
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Frame = +3
Query: 378 ATMAGSA--TITGATLGPSATITGL--GTMMAGSAMIT---GETAGFSSTFDCSGSTLST 536
+T++GS+ T+TG+T+ ++TI+G + + GS T T SS SGST ST
Sbjct: 629 STISGSSASTVTGSTVTEASTISGSTESSTIPGSTESTVSEASTVSGSSVSTVSGSTEST 688
>U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical
protein F48C1.8 protein.
Length = 343
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +2
Query: 326 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFFN 505
HDHGGH H + H H G HDH + + + +G D+G R F
Sbjct: 32 HDHGGHD-HGGHDHGGHDHGGWGGHDHHDHHHGGWGGHDHDHGNGGGGGDNGWGYRPFTG 90
Query: 506 I*LFRFDAFNGGSAGSIV 559
F + GG G ++
Sbjct: 91 ---FGGRNYYGGGGGGLL 105
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 329 DHGG--HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 478
DHGG H GH H GH+ G HDH G+ G+++ ++ G +DH
Sbjct: 23 DHGGGDHGGHDHGGHDHGGHDHG-GHDHGGWG---GHDHHDHHHGGWGGHDH 70
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Frame = +2
Query: 305 GHNGRVSHDHGG------HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDG 460
G G SH HGG H H H+ G G H H Y+ S + YY G
Sbjct: 179 GGGGGGSHHHGGGGGGGGHHHHGGGGHYHGGGGGFHHHHHSSYSGSSSDYSSNNYYGG 236
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDH 406
GH+ HDHGG GH + H G GG HDH
Sbjct: 41 GHD-HGGHDHGGWGGHDHHDH-HHGGWGGHDHDH 72
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQ--GHVTNVHWARGHNGGVSHDH 406
GH+ HDHGGH G + H H G HDH
Sbjct: 36 GHD-HGGHDHGGHDHGGWGGHDHHDHHHGGWGGHDH 70
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 308 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGRISNDHG 481
H+ H H G H H GH+G SH H G+ S G+ + A + G +HG
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHG--SHGVHHGHHESHGHGHHAPAHHGH-HGEHG 610
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWA--RGHNG--GVSHDHRG 412
GH+G HG H+ H H GH+G GV H H G
Sbjct: 578 GHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHG 617
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGRISNDHG 481
GH+G HG H + H H G H H G+ N++ ++ H
Sbjct: 668 GHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKHSKKQHT 727
Query: 482 RNS 490
+ S
Sbjct: 728 KKS 730
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNG-----GVSHDHRG 412
GH+G +HG H GH H A H+G G H H G
Sbjct: 517 GHHG----EHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHG 553
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 308 HNGRVSH-DHGGHQGHVTNVHWARGHNG-GVSHDHRGYTRSLGNNYRARYYDGRISNDHG 481
H+ H +HG H GH H A H+G SH H ++ + ++ ++ HG
Sbjct: 413 HHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHG 472
Query: 482 RN 487
+
Sbjct: 473 EH 474
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARG---HNGGVSHDHRGYTRSLG 430
GH+G HG H H + H H+ H H G+ S G
Sbjct: 540 GHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHG 584
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 299 ARGHNGRVSH--DHGGHQGHVTNVHWARGHNGGVSHDHRG 412
A H+G H HG H GH + H GH+ H H G
Sbjct: 570 APAHHGHHGHHGSHGVHHGHHES-H-GHGHHAPAHHGHHG 607
>U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical
protein ZK1290.6 protein.
Length = 507
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDG 460
G G HGGH G H G +GG H G+ RS + + Y G
Sbjct: 47 GGKGGGGGSHGGHGGSHGGSHGGHGSHGGSYGGHSGHGRSFSTSSGSSGYRG 98
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 305 GHNGRVSH-DHGGHQGHVTNVHWARGHNGGVS-HDHRGYTRSLGNNYRARYYDGRISNDH 478
GH H DHG GH + H + GH+ + HDH G++ N+ + N H
Sbjct: 360 GHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDH-GHSHGGNNDNHGHSHSAGSDNHH 418
Query: 479 GRN 487
G +
Sbjct: 419 GHS 421
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 305 GHNGRVSH-DHGGHQGHVTNVHWARGHNGGVS-HDHRGYTRSLGNNYRARYYDGRISNDH 478
GH H DHG GH + H + GH+ + HDH G++ N+ + N H
Sbjct: 378 GHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDH-GHSHGGNNDNHGHSHSAGSDNHH 436
Query: 479 GRN 487
G +
Sbjct: 437 GHS 439
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 320 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRG 412
V H GGH GHV H H+G H G
Sbjct: 35 VVHTDGGHHGHVDTHHHEESHHGEHHGGHHG 65
>Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical
protein H13N06.5 protein.
Length = 462
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 323 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY---RARYYDGRISNDHGRN 487
+HDHG H + H+ G +HDH G++ ++ A + G DHG +
Sbjct: 75 AHDHG----HAHDHDHGHAHDHGHAHDHHGHSHDEEEDHHHGHAHDHHGHSHEDHGHS 128
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 326 HDHGGHQGHV-TNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 487
H GGH GH+ T+ H H+GG H G+ G +Y + Y HG +
Sbjct: 38 HTDGGHHGHMDTHHHHDSHHHGG---HHGGHH---GGHYESHYESHHHHGHHGHH 86
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 308 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 415
H+ SH HGGH G H+ + H H G+
Sbjct: 50 HHHHDSHHHGGHHGGHHGGHYESHYESHHHHGHHGH 85
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 317 RVSHDHGGHQGHVTNVHWARGHNG-GVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 493
R H HGGH GH + G +G G S HRG G + R G HG R
Sbjct: 299 RGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGRH--GGHGRHGSRSGSPGGRHGHGGR 356
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 305 GHNGRVSHDH--GGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN--YRARYYDGRISN 472
GH GR H G H H + H RGH G H G++ ++DGR +
Sbjct: 352 GHGGRHGPPHCPGRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPS 411
Query: 473 DHGRN 487
HG +
Sbjct: 412 RHGHH 416
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 326 HDHGGHQGHVTNVHWARGHNG-GVSHDHRG 412
H HGGH GH + G +G G S HRG
Sbjct: 253 HGHGGHGGHGSRSGSPGGRHGHGGSGHHRG 282
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 411 ATLGPSATITG----LGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMW 578
+T P +T+T G+ +GS + TG T G S++ S ++LS+ + ++
Sbjct: 1209 STNSPGSTVTQPSTVRGSTSSGSTVTTGSTEGSSTSGSSSATSLSSSSPVPSTSQSPNPS 1268
Query: 579 TRGVSCPGTRGPTWTGDGTMGAST 650
T G S P T P+ + + +T
Sbjct: 1269 TSGSSTP-TPNPSQSTSPVVSTTT 1291
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 387 AGSATITGATLGPSATITG---LGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAAS 557
AGS T+ +T P+A+ T GTM + S+ G T SST + S + V + +S
Sbjct: 1498 AGS-TVASSTASPAASSTAPSSTGTMSSTSSGTVGSTISESSTTASASSQTGSTVTMGSS 1556
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 387 AGSATITGATLGPSATITG---LGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAAS 557
AGS T+ +T P+A+ T GTM + S+ G T SST + S + V L +S
Sbjct: 1747 AGS-TVVSSTASPAASSTAPSSTGTMSSTSSGTVGSTMSQSSTAASTTSHTGSTVTLGSS 1805
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 329 DHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR-ARYYDGRISNDHGRN 487
+H Q H ++R N G ++H G R NN R R Y+ R ++++ +N
Sbjct: 46 NHQYQQSHPRRTSFSRDGNTGYYNNHSGNKRQTYNNQRGGRSYNHRGNSNYQQN 99
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 329 DHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR-ARYYDGRISNDHGRN 487
+H Q H ++R N G ++H G R NN R R Y+ R ++++ +N
Sbjct: 46 NHQYQQSHPRRTSFSRDGNTGYYNNHSGNKRQTYNNQRGGRSYNHRGNSNYQQN 99
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Frame = +3
Query: 375 GATMAGSATITGATLGPSATITGLGTMMAGSAM----ITGETAGFSSTFDCSGSTLSTGV 542
G++ +G +T T G S+T T T GS + ++ T+G SST + ST + G
Sbjct: 831 GSSTSGQTAVT--TQGSSSTQTNSNTGSTGSTVTNPPVSSSTSGSSSTQPIASSTANPGS 888
Query: 543 ALAASLMLIRMWTRGVSCPGTRGPTWTGDGTM 638
+ + + ++ T+G S T T + T+
Sbjct: 889 STSGTTVVT---TQGSSSTQTNPNTGSTGSTV 917
>AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical
protein Y25C1A.4 protein.
Length = 533
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/85 (24%), Positives = 31/85 (36%)
Frame = +3
Query: 381 TMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASL 560
T ++T +G+T +A T AG + + G +ST GST ST
Sbjct: 42 TTTVASTSSGSTTASTAAGGSTSTTAAGGSTASTAAGGSTSTTAAGGSTASTAAGGPTGS 101
Query: 561 MLIRMWTRGVSCPGTRGPTWTGDGT 635
T + G+ T G T
Sbjct: 102 TAAGGSTASTAAGGSTASTAAGGST 126
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLG-NNYRARYYDGRISN 472
+ G NGR ++ G TN + + HN +H G R G N + Y +G+ SN
Sbjct: 484 SNGSNGRWRGNN--RNGATTNGYGYQQHNNRQNHYQNGQQRENGENGHHNHYQNGQSSN 540
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLG-NNYRARYYDGRISN 472
+ G NGR ++ G TN + + HN +H G R G N + Y +G+ SN
Sbjct: 386 SNGSNGRWRGNN--RNGATTNGYGYQQHNNRQNHYQNGQQRENGENGHHNHYQNGQSSN 442
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 27.9 bits (59), Expect = 6.6
Identities = 25/100 (25%), Positives = 49/100 (49%)
Frame = +2
Query: 302 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 481
R +GR GGHQG+ G++ G D R ++R N+ +RY + ++G
Sbjct: 49 RRPDGRQDSYGGGHQGN-------HGNSYGRREDDRSHSRD--NHGGSRYGERDDRGNNG 99
Query: 482 RNSRLFFNI*LFRFDAFNGGSAGSIVDVNKNVDERGKLSR 601
R++ ++ + +D+ GG D + + D+RG +++
Sbjct: 100 RSADNRYSQSNYNYDSNRGGQHYQ-RDNHGSKDDRGPMNQ 138
>Z81093-3|CAB03147.1| 610|Caenorhabditis elegans Hypothetical
protein F58D2.2 protein.
Length = 610
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +3
Query: 393 SATITGAT-LGPSATITGLGTMMAGSAMIT-----GETAGFSSTFDCSGSTLSTG 539
SAT G T +G AT T + T+ G T T G + T +GST +TG
Sbjct: 553 SATTAGLTGVGFGATTTAMQTISPGKTGATTLGSTSSTTGITETTGTTGSTATTG 607
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARG-HNGGVSHDHRGYTRSLGNNY---RARYYDGRI 466
AR HN H+ G H G N + R H + H+ RS +N R + +D
Sbjct: 61 ARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNR 120
Query: 467 SNDHGRN 487
GRN
Sbjct: 121 HQSQGRN 127
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARG-HNGGVSHDHRGYTRSLGNNY---RARYYDGRI 466
AR HN H+ G H G N + R H + H+ RS +N R + +D
Sbjct: 905 ARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNR 964
Query: 467 SNDHGRN 487
GRN
Sbjct: 965 HQSQGRN 971
>AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical
protein H05C05.1b protein.
Length = 219
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 305 GHNGRVSH-DHGGHQGHVTNVHWAR---GHNGGVSHDHRGYTRSLGNNYR 442
GH +V DHG HQ T+ ++ G GG +HR Y +S Y+
Sbjct: 76 GHIDKVPRGDHGDHQEMDTSTTSSKSGGGGGGGHQKNHRKYDQSSSQRYQ 125
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 305 GHNGRVSH-DHGGHQGHVTNVHWAR---GHNGGVSHDHRGYTRSLGNNYR 442
GH +V DHG HQ T+ ++ G GG +HR Y +S Y+
Sbjct: 580 GHIDKVPRGDHGDHQEMDTSTTSSKSGGGGGGGHQKNHRKYDQSSSQRYQ 629
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +2
Query: 296 WARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISND 475
W G N + GG G +N W G N ++ R NN Y + +ND
Sbjct: 200 WNSGSNSGGYNGGGGGSGGGSN--WNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTND 257
Query: 476 HGRNS 490
+ NS
Sbjct: 258 NDGNS 262
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +2
Query: 296 WARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISND 475
W G N + GG G +N W G N ++ R NN Y + +ND
Sbjct: 200 WNSGSNSGGYNGGGGGSGGGSN--WNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTND 257
Query: 476 HGRNS 490
+ NS
Sbjct: 258 NDGNS 262
>U42841-9|AAM97955.1| 375|Caenorhabditis elegans Gex interacting
protein protein16, isoform g protein.
Length = 375
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 460
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 109 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 164
>U42841-5|AAM97959.1| 657|Caenorhabditis elegans Gex interacting
protein protein16, isoform k protein.
Length = 657
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 460
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 391 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 446
>U42841-4|AAK77640.1| 706|Caenorhabditis elegans Gex interacting
protein protein16, isoform c protein.
Length = 706
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 460
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 440 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 495
>U42841-3|AAK77638.1| 663|Caenorhabditis elegans Gex interacting
protein protein16, isoform a protein.
Length = 663
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 460
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 397 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 452
>U42841-2|AAK77639.1| 603|Caenorhabditis elegans Gex interacting
protein protein16, isoform b protein.
Length = 603
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 460
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 337 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 392
>U42841-1|AAM97958.1| 716|Caenorhabditis elegans Gex interacting
protein protein16, isoform j protein.
Length = 716
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 299 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 460
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 450 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 505
>AL110498-3|CAB54470.1| 846|Caenorhabditis elegans Hypothetical
protein Y64G10A.6 protein.
Length = 846
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 631 PSPVHVGPLVPGQLTPLVHILINI-NDAASATPVESVEPEQSNVEE 497
P P+HV P P L P + D V+SVE + + +EE
Sbjct: 736 PGPIHVEPTEPEVLEPAEEPMEEAEEDEEDEDDVDSVEGQTARIEE 781
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,475,866
Number of Sequences: 27780
Number of extensions: 161200
Number of successful extensions: 698
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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