Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l15r
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05510.1 68415.m00583 glycine-rich protein 35 0.054
At3g28840.1 68416.m03598 expressed protein 32 0.38
At3g63100.1 68416.m07087 glycine-rich protein 31 0.88
At2g05440.2 68415.m00575 glycine-rich protein 31 0.88
At2g05440.1 68415.m00574 glycine-rich protein 31 0.88
At1g27090.1 68414.m03302 glycine-rich protein 30 1.5
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 308 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 439
H G H GGH G + H GHNGG H GY G +Y
Sbjct: 44 HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 439
GH G H HGGH G H G+ GG H G+ G +Y
Sbjct: 54 GHYGGGGHGHGGHNG--GGGHGLDGYGGG----HGGHYGGGGGHY 92
>At3g28840.1 68416.m03598 expressed protein
Length = 391
Score = 31.9 bits (69), Expect = 0.38
Identities = 28/94 (29%), Positives = 37/94 (39%)
Frame = +3
Query: 369 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 548
G+ A+ AG+ T A+ G SAT TG AG + +G T G+T + G
Sbjct: 186 GIDASAAGAGDST-ASGGVSATGTGSYGAGAGGSSASGSDTAAGGTTATGGTTAAGGSTA 244
Query: 549 AASLMLIRMWTRGVSCPGTRGPTWTGDGTMGAST 650
A T G G T +G GT T
Sbjct: 245 AGGTTASGAGTAGYGAT-AGGATASGAGTAAGGT 277
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Frame = +2
Query: 302 RGHNGRVSHDHG---GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNY 439
RGH H HG GH+ H + R H G H HRG+ R G +
Sbjct: 90 RGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +2
Query: 326 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 493
HD+G H + H GH G H G+ R G+ + G HGR+ R
Sbjct: 62 HDYGRDCCHCDHCH---GHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHR 114
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN 436
G + R D G H+GH H RGH G H G+ R G +
Sbjct: 110 GRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRGRGGH 150
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = +2
Query: 308 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 487
H H H H GH RGH G H HR + R + ++ G + H R
Sbjct: 75 HGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGH-GHHHHRG 132
Query: 488 SR 493
R
Sbjct: 133 HR 134
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 400
GH G H HGGH G H G+ GG H
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 415
GH G H GG GH GHNGG H GY
Sbjct: 46 GHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 400
GH G H HGGH G H G+ GG H
Sbjct: 52 GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +2
Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 415
GH G H GG GH GHNGG H GY
Sbjct: 46 GHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
>At1g27090.1 68414.m03302 glycine-rich protein
Length = 420
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 302 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 463
+ GR GG G N RG GG + + Y +S GN Y+ YY+ R
Sbjct: 340 QNQRGRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,976,451
Number of Sequences: 28952
Number of extensions: 149038
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -