Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l13r
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    40   0.003
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    39   0.004
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.53 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   1.2  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   2.8  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   2.8  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    29   2.8  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 8/209 (3%)
 Frame = -1

Query: 617 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPG--EISYVHFAVNHPEFSEE 444
           C   +L   H ++ A CF  +    +Y  ++         G  +I Y+     +P + ++
Sbjct: 54  CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KD 112

Query: 443 NYDKDVSIVRVTH-AIHFGPNXXXXXXXXXXXXXXXXXXVDLLGWGTTVQGGSVSDGNLH 267
            +  D++I+ + +  I F                       + GWG+    G      L 
Sbjct: 113 IFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWGSM---GLRYAERLQ 169

Query: 266 KLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN-----AL 102
              + + N+ +C    + +  + + + FCAG +  GG D    D G P   +       L
Sbjct: 170 AALIPIINRFDCVNSSQIYSSM-SRSAFCAGYLE-GGIDSCQGDSGGPFACRREDGAFVL 227

Query: 101 VGIVSFGKSNANDIYPVVLTSISSFTEWI 15
            G++S+G   A    P + T ++ +  WI
Sbjct: 228 AGVISWGDGCAQKKQPGIYTMVAPYLSWI 256


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
 Frame = -1

Query: 317 GWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNT 138
           GWG+T++G S+S   L ++ + + +   C        R+   +  CAG    G  D    
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQG 239

Query: 137 DLGAPAFFQN----ALVGIVSFGKSNANDIYPVVLTSISSFTEWI 15
           D G P          L G+VS+G   A    P V  ++ S + WI
Sbjct: 240 DSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 429 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 328
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 405 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 274
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 429  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 334
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -2

Query: 652 YSYPS*INGSNSALVLFSPTTTTFQLL 572
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 122 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 226
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 122 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 226
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = -2

Query: 649 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTL 473
           S PS    S++     +  TTT  ++P +   +TI  T  + S+     V+       T+
Sbjct: 220 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 278

Query: 472 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 350
           + T+P +    T+   AS     PSTS  T++    +N  S
Sbjct: 279 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 319


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = -2

Query: 649 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTL 473
           S PS    S++     +  TTT  ++P +   +TI  T  + S+     V+       T+
Sbjct: 202 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 260

Query: 472 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 350
           + T+P +    T+   AS     PSTS  T++    +N  S
Sbjct: 261 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 301


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 669 AGMLANRHRSTEIASSAAADGSEHSYG*GENGNHG 773
           AG       ++   S    DG + SYG G  GNHG
Sbjct: 33  AGQRRREDHNSSYQSYRRPDGRQDSYGGGHQGNHG 67


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 561  METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 740
            +E  SS  V    E+     +EP++++  +Y +LD   M + RHRS +I S    D   H
Sbjct: 907  LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963

Query: 741  SY 746
             Y
Sbjct: 964  DY 965


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -1

Query: 632 QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPEF 453
           ++F+Q    VLT   + S A CF   F    YR  +    R   P  +  +  +V HP  
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365

Query: 452 SEENYDKDVSI 420
            E +   ++ I
Sbjct: 366 RETSKTSNLVI 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,154
Number of Sequences: 27780
Number of extensions: 455332
Number of successful extensions: 1250
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)