Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l13r
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.49
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.49
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 1.5
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 1.5
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 1.5
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof... 29 4.6
At5g25170.1 68418.m02984 expressed protein 28 6.1
At2g01050.1 68415.m00010 hypothetical protein 28 6.1
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi... 28 6.1
At4g11530.1 68417.m01850 protein kinase family protein contains ... 28 8.0
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like... 28 8.0
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.49
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 333 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 437
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.49
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 333 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 437
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 578 LKGSGSW*EQYQRTVGTIDSRWV 646
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 578 LKGSGSW*EQYQRTVGTIDSRWV 646
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 578 LKGSGSW*EQYQRTVGTIDSRWV 646
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 379
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 214 PLYCSLQFSLLVTMSSSLWRLPSDTL 291
P Y L FS+LVT +SLW L D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237
>At5g25170.1 68418.m02984 expressed protein
Length = 218
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 189 QILRRFGPGWWPRLRQY*LGCPCLLP 112
Q+ RR P W RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152
>At2g01050.1 68415.m00010 hypothetical protein
Length = 515
Score = 28.3 bits (60), Expect = 6.1
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +3
Query: 207 IMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTL-----GYYDTLLDNS 371
+MT++ P FF+ FEL E Y AAL G P + L +D L D+
Sbjct: 108 VMTVMDLPRQFFM--IRFELEE---EYMAALTGG-PWRVLGNYLLVQDWSSRFDPLRDDI 161
Query: 372 TLLDVWAEVDGMCYSYDAHILVVILLREFG 461
VW + + Y+Y L++ + R G
Sbjct: 162 VTTPVWVRLSNIPYNYYHRCLLMEIARGLG 191
>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 656
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 143 NTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSIS 33
N +G AF NA + FG +N IYP +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -1
Query: 641 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 522
+LN F L + Y+ST TCF+G F YD RRI++
Sbjct: 2 MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46
>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
thaliana]
Length = 359
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +3
Query: 249 HNEF-ELVEVAVRYTAAL----NGSSPSEQINKNTLGYYDTLLDNSTLLDVWA--EVDGM 407
HN F L EV+ +A L S + Q+N G+ + D D+W DG
Sbjct: 84 HNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQN--DIWLCHSFDGT 141
Query: 408 CYSYDAHILVVILLREF 458
C+++ A + +LREF
Sbjct: 142 CFNFTAFQPAINILREF 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,483
Number of Sequences: 28952
Number of extensions: 421677
Number of successful extensions: 1106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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