Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l13f
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 1.8
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 1.8
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 29 2.4
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 29 3.1
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 7.2
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 28 7.2
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 28 7.2
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 27 9.5
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 29.5 bits (63), Expect = 2.4
Identities = 35/130 (26%), Positives = 55/130 (42%)
Frame = +3
Query: 123 SIPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVAVS 302
S+P + K S+ S + SNS F + ++P S + ++ LHT +SL VS
Sbjct: 400 SLPRAAVNKGSHVSHVALSNSTTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVS 459
Query: 303 PVKYLMFTLLLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS*YPRVFLLIC 482
V + ++ Y TSA +S+R S +S Y + +L
Sbjct: 460 SVNNRPQNKRKQLSTPSTWDENKLNRGY----ARTSAPSSAR---SISLSCYSGLDVLSS 512
Query: 483 SDGELPFKAA 512
S G LP+K A
Sbjct: 513 SVGILPYKTA 522
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 564 SLLVTMSSSLWRLPSDTLPP*TVVPHPSRSTKIPWGITTP 445
SL T+SS+L R+PS +LPP ++ +P I P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 478 SARMGNYRSRRQCI*RQPPQARTHCDQQRKLQG 576
SAR R I +PP R HC+++R+++G
Sbjct: 86 SARNCRRRRHHPRIRLRPPPTRRHCEREREMRG 118
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 535 VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 395
V++A ++ L + E I N L +D +LDN+TL+ ++ + M
Sbjct: 299 VDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 361 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 471
L GC+ N C R K+P C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 531 RLPSDTLPP*TVVPH-PSRSTKIPWGITTPCWIIAPCWMF 415
+LPS +LPP PH P ST + T+PC P F
Sbjct: 6 KLPSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCF 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,161,490
Number of Sequences: 37544
Number of extensions: 439976
Number of successful extensions: 1147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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