Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l12r
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    27   1.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   3.3  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   3.3  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   3.3  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   5.8  

>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 218 RFTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGAV 325
           +F K  PTP  VR  LAN V    +      P  A+
Sbjct: 254 KFAKTSPTPDQVREVLANYVSEPQKLGCYSAPKQAI 289


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 422 KALALSVDLGSATSLVDTATIAVNTNNRANFILQETCTGTQN 547
           +A ALS  + ++TSL    T A+ TN+++   L E+C    N
Sbjct: 447 QAQALSTQISASTSLSTVLTQALKTNDQS---LLESCFNNNN 485


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 57  RELLIKKMGRTNFLCKRKNKN-FVYLHVNVQN 149
           R +L+  +GR  F+CK K++  F+ + VN+++
Sbjct: 454 RVMLLTDVGRCAFVCKGKHERLFIEMEVNLKD 485


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 197 EEDFALPYKFGDAKMHILDVYMQ 129
           E DF++   F D+  H+L +Y+Q
Sbjct: 191 ESDFSMALLFWDSGFHVLQLYLQ 213


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 275 VDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSL-SLEVILPILKA 427
           VDP+T  ALT  P   V  + ++ +    +   +K +K L ++E   P+L+A
Sbjct: 529 VDPKTGKALTNNPVPPVETSSSSGQNFFGSFFGSKNKKRLAAMEPPPPVLRA 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,448
Number of Sequences: 5004
Number of extensions: 36139
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)