Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l12r
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    27   7.0  

>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +2

Query: 233 KPTPPPVRRTLANCVDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEV-I 409
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 410 LPIL--KALALSVDLGSATSLVDTATIAVNTN 499
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +2

Query: 233 KPTPPPVRRTLANCVDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEV-I 409
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 410 LPIL--KALALSVDLGSATSLVDTATIAVNTN 499
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +2

Query: 341 TRELIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNNRANFIL 520
           TR+L +  +L  +  K+  L +   ILK   L   LG+A  LV+  T  ++  NR +  L
Sbjct: 792 TRDLRLDIKLRNRFLKAEQLLIKNGILKTEILENLLGTALYLVENVTAWMHMTNRKDKSL 851

Query: 521 QE 526
           ++
Sbjct: 852 KD 853


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,245,941
Number of Sequences: 27780
Number of extensions: 211126
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)