Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l12f
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)                         29   2.9  
SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                      29   3.8  
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   3.8  
SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)          28   6.7  
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         28   6.7  
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)                      28   6.7  
SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   8.8  

>SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 295  LCRSSDADSPDASTGRRREPHVDNPR 218
            L R + A SP   + R R PHVDN R
Sbjct: 1079 LIRRARARSPHVDSARARSPHVDNTR 1104


>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
          Length = 1329

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/94 (24%), Positives = 40/94 (42%)
 Frame = -1

Query: 537 KRQGSFEINTRIIN*KNGENEFFVQTKKQKLRVFACKRPEYAF*RPQICTVKRNPLRGAF 358
           KR  +   N+   N  N +  FF Q  ++ ++ F  +     +  P +    +N L+ A 
Sbjct: 102 KRLNASRTNSNASNPSNKQKTFF-QPHEKSIQRFGGRINVDKYHGPPLPNTAKNVLKEAN 160

Query: 357 TN*RFTKVKPTPPPVRRTLANCVDPRTRTALTRL 256
                 KV+      R T+   +DPRTR  + +L
Sbjct: 161 RKKDNEKVRSKDKADRATVEQVLDPRTRMIIFKL 194


>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = -1

Query: 327 TPPPVRRTLANCVDPRTRTALTRL-PAGAVNLTLTTRELIVAARLTTKLRKSLSLEVILP 151
           TPPP  R L     PRT T    L P G +N+T++       AR   + RKSL   V + 
Sbjct: 172 TPPPWLRLLP-APYPRTPTTTCALVPVGTINITVSENN----ARSLRRKRKSLFCIVRVS 226

Query: 150 ILKALALSVDLGSATSLVDTATIAVNTNNRANFILQET 37
                + S  L    +      I +  +N + ++  ET
Sbjct: 227 KSNPFSRSSLLSEIMAEPSKWNIGLMNDNSSKYLTAET 264


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +3

Query: 369 EEDFALPYKFGDAKMHILDVYMQIHE 446
           ++ F    ++ +A  H++D+Y+++HE
Sbjct: 464 DDQFLKSPEYSEASSHVMDIYLEVHE 489


>SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
          Length = 576

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/90 (24%), Positives = 40/90 (44%)
 Frame = -1

Query: 300 ANCVDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEVILPILKALALSVD 121
           A  V   + T    + A  V+  ++T  L VAA + +K   ++ L V   ++     +V+
Sbjct: 359 ATVVSKASSTVELGVAATVVSKAISTVGLGVAATVVSKAISTVGLGVAATVVFNAISTVE 418

Query: 120 LGSATSLVDTATIAVNTNNRANFILQETCT 31
           LG A ++V  A+  V     A  + +   T
Sbjct: 419 LGVAATVVSKASSTVELGVAATVVSKAIST 448


>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 303 LANCVDPRTRTALTRLPAGAVNLTLTTRELIV-AARLTTKLRKSLS 169
           L N V    R  L + P G +NL + TR+LI  +  L T  R+++S
Sbjct: 12  LTNLVRDCVREELRKNPGGNINLLMRTRQLIANSPLLGTASREAVS 57


>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
          Length = 382

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 410 NAYSGR-LHANTRSFCFFVCTKNSFSP 487
           N  SGR   +++RSF F +C KN + P
Sbjct: 273 NTMSGRGYQSSSRSFLFTLCNKNGYRP 299


>SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 893

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 298 ELCRSSDADSPDASTGRRREPHVDNPRVN 212
           +L  S   DSPD   G R  P   +PR N
Sbjct: 784 DLVTSRRTDSPDVDNGNRDSPPPTSPRAN 812


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,269
Number of Sequences: 59808
Number of extensions: 291686
Number of successful extensions: 842
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)