Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l10r
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...   171   1e-43
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   2.4  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   3.1  
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.1  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    27   3.1  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   4.1  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   5.4  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   9.5  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   9.5  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   9.5  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score =  171 bits (416), Expect = 1e-43
 Identities = 92/241 (38%), Positives = 146/241 (60%), Gaps = 11/241 (4%)
 Frame = -2

Query: 764 KWNLDPNASYVHICTNETIHGVEFDFIPDT--KGVPLIADMSSNIMSKKVDVSKFGVIYA 591
           K+  D   S V+ C NET+HGVEF+  P    KG   + D+SSN +S+K+D +K  +I+A
Sbjct: 152 KFTPDGETSLVYYCDNETVHGVEFNEPPTNIPKGAIRVCDVSSNFISRKIDFTKHDIIFA 211

Query: 590 GAQKNIGTSGVALVIVREDLLNQA---------LPTCPSLLDWTANYKQNSILNTPPMFA 438
           GAQKN G +G+ +V VR+ +L +          +P  P++ D+      +S+ NT P+  
Sbjct: 212 GAQKNAGPAGITVVFVRDSVLARPTPAELHKLNIPVSPTVSDYKIMADNHSLYNTLPVAT 271

Query: 437 IYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 258
           ++ +   L+++  +GGL  +   + +K+ L+Y+T+++ +  Y + V    RS+MNV FRI
Sbjct: 272 LHAINLGLEYMLEHGGLVALEASSIEKSKLLYDTLDKHD-LYISVVEPAARSRMNVTFRI 330

Query: 257 GCPGDDALEKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKH 78
                  LE EFL  AE   L+QLKG+R VGGIRAS+YNA+++E+ + L+  +E F K H
Sbjct: 331 E---PQELESEFLAEAEKHHLVQLKGYRSVGGIRASLYNAISVEQTRRLIDLLESFAKAH 387

Query: 77  S 75
           S
Sbjct: 388 S 388


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 203 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 289
           K ++P+RI  LR +H+  Q    + FY E
Sbjct: 117 KLRYPNRITILRGNHESRQITQVYGFYDE 145


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 131 LEEVQALVQYMEEFYKKHSK*ILLNLYKQYILFVCYLEFVVLY 3
           LE++    +  E+F+K+ S+  +LNL++ Y  F     F+ L+
Sbjct: 405 LEQLSYHFRICEKFFKESSENKMLNLFEDYNEFGLCKSFICLF 447


>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 143 NAVTLEEVQALVQYMEEFYKKHSK*ILLNLYKQYILFVCYLEFVV 9
           +AV  E+++    Y E F K      +L+    Y+L  C++EF V
Sbjct: 9   HAVPREQIRRRYSYFEAFEKNCHIQGILSKRALYMLIPCFMEFAV 53


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 203 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 289
           K ++P RI  LR +H+  Q    + FY E
Sbjct: 104 KIRYPQRITILRGNHESRQITQVYGFYDE 132


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 622 TFFDIMFEDISAIKGTPFVS 681
           TF+DI+FED+  +  +PF S
Sbjct: 540 TFWDILFEDVPGVFQSPFQS 559


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 167 GGIRASIYNAVTLEEVQALVQYMEEFYKKHSK*ILLN 57
           G I A++ N+VTL    +     E++YK H    LLN
Sbjct: 443 GSIEATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLN 479


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 598  ITPNFETSTFFDIMFEDISAIKGT 669
            ITPN  TS FFD++ +D     G+
Sbjct: 1438 ITPNLLTSQFFDVLTKDALYTNGS 1461


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 535 SSLTMTSATPDVPIFF*APAYITPNFETSTF 627
           + L++ S+TP  P+    P Y TP+   S F
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNF 457


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 577 FF*APAYITPNFETSTFFDIMFEDISAIKGTPFVSGMKSNS 699
           FF   A   PN   S F  IM +++  +KG   +  M ++S
Sbjct: 287 FFLQIAVAIPNGGLSNFSSIMLKNLGYVKGKALLMNMPTSS 327


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 574 IFF*APAYITPNFETSTFFDIMFEDISAIKGTPFVS--GMKSNSTPCIVSLVQICTYEAL 747
           IFF     IT +   +     +++D   +K +      G+ S+   CI+S   + T E  
Sbjct: 136 IFFLGNFKITNSMSAAMLTFKVYDDSKRLKASSMADYIGVLSSKLACIISKPAVKTPEIY 195

Query: 748 GSRFHFV 768
              FH++
Sbjct: 196 SKLFHYL 202


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 121 FKLSFSTWRSSIKNIPSKYC*IYTSNIYFLYVIWNL-LFY 5
           F  SF TW+S+ +++P K       + YF ++  N  +FY
Sbjct: 155 FPHSFPTWKSAFRDVPDKDWAKTCLDWYFRFINCNWPIFY 194


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 642 KHYVEES*CFKVWGDICWCSKEYWY 568
           +H V     F+++  + WC  +YWY
Sbjct: 195 EHAVAPFFVFQIFCCVLWCLDDYWY 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,551,844
Number of Sequences: 5004
Number of extensions: 79567
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)