Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l10r
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   8e-25
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score =  111 bits (266), Expect = 8e-25
 Identities = 54/109 (49%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
 Frame = -2

Query: 398 NGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCP-GDDALEKEF 222
           N  +  M + +  K+++IY+ ++ SNGFY+  V K  RS+MNV  RIG P G+  LEK+F
Sbjct: 99  NETVHEMERRSIIKSTMIYDVMDNSNGFYWGQVKKEARSRMNVVLRIGGPDGNQDLEKKF 158

Query: 221 LKGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKHS 75
           ++ A T G+IQLKGHR VGGIR S+YNA+ LEEV+ LV++M +F + +S
Sbjct: 159 VEEAATKGMIQLKGHRSVGGIRISLYNAIHLEEVEKLVKFMVKFQETNS 207



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = -2

Query: 779 LPDQTKWNLDPNASYVHICTNETIHGVE 696
           +PD ++W L+P+ASYV+ C NET+H +E
Sbjct: 79  IPDPSQWTLNPDASYVYYCENETVHEME 106


>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 176 RDVGGIRASIYNAVTLEEVQALVQYME 96
           RDV  I+A+I NA +L+EVQ L + ++
Sbjct: 689 RDVAAIKAAIANAKSLDEVQGLERLLK 715


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 763 NGTLIPMLHMYIFVLMKQYMVLNLTSYQIRKE 668
           N  L+P LH YI   ++ +  L+ TSY I  +
Sbjct: 43  NKVLLPALHKYIAPKIQNHYALHKTSYNIHSQ 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,347,158
Number of Sequences: 59808
Number of extensions: 542208
Number of successful extensions: 1230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)