Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l10f
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35630.1 68417.m05060 phosphoserine aminotransferase, chlorop...   104   5e-23
At2g17630.1 68415.m02039 phosphoserine aminotransferase, putativ...    93   1e-19
At5g24350.1 68418.m02870 expressed protein weak similarity to ne...    27   8.7  

>At4g35630.1 68417.m05060 phosphoserine aminotransferase,
           chloroplast (PSAT) identical to Phosphoserine
           aminotransferase, chloroplast precursor (PSAT)
           (SP:Q96255)[Arabidopsis thaliana]; contains TIGRFAM
           TIGR01364: phosphoserine aminotransferase; contains Pfam
           PF00266: aminotransferase, class V
          Length = 430

 Score =  104 bits (249), Expect = 5e-23
 Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
 Frame = +1

Query: 124 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 303
           +VFNF AGPA LPE V    + +L N+  SG+S++E SHR   ++ +  + +  +R LL+
Sbjct: 72  RVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLE 131

Query: 304 VPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLP- 480
           +P  Y V             +PLNL     T D+VVTG+W          Y K N++   
Sbjct: 132 IPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVIWSG 191

Query: 481 PTDKYEDIPDQTKWNLDPNASYVHICTN 564
            ++KY  +P   +    P+A Y+HIC N
Sbjct: 192 KSEKYTKVPSFEELEQTPDAKYLHICAN 219


>At2g17630.1 68415.m02039 phosphoserine aminotransferase, putative
           similar to Phosphoserine aminotransferase, chloroplast
           precursor (PSAT) (SP:Q96255) [Arabidopsis thaliana];
           contains TIGRFAM TIGR01364: phosphoserine
           aminotransferase; contains Pfam PF00266:
           aminotransferase, class V
          Length = 422

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
 Frame = +1

Query: 124 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 303
           +V NF AGPA LPE V    +++L N+  SG+S++E SHR   ++ +  + +  +R LL+
Sbjct: 62  RVINFAAGPAALPENVLLKAQSDLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLE 121

Query: 304 VPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLP- 480
           +P  Y V             +PLNL     + DY+VTG+W          Y    ++   
Sbjct: 122 IPSEYSVLFLQGGATTQFAALPLNLCKSDDSVDYIVTGSWGDKAFKEAKKYCNPKVIWSG 181

Query: 481 PTDKYEDIPDQTKWNLDPNASYVHICTN 564
            ++KY  +P         +A Y+HIC N
Sbjct: 182 KSEKYTKVPTFDGLEQSSDAKYLHICAN 209


>At5g24350.1 68418.m02870 expressed protein weak similarity to
            neuroblastoma-amplified protein [Homo sapiens] GI:4337460
          Length = 2376

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 469  LVLPPTDKYEDIPDQTKW 522
            LVLPP   Y  IPD + W
Sbjct: 1741 LVLPPNGSYMHIPDSSTW 1758


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,754
Number of Sequences: 28952
Number of extensions: 206995
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)