Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l09r
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00...    29   3.3  
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi...    28   7.7  

>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 338

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 753 DHDHHDSGLNXTWLGHCCSILLHHGVQYL 667
           D  +HDS +N  +LG CC + L   + +L
Sbjct: 184 DDVNHDSLVNHNYLGRCCRVSLKGNIYWL 212


>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 685

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 361 LHSTTIVVKPSLSRSFFFSQTKVIN*INYSNILTPSYLYFIQYFNNSSRKTLFFVTVPL 537
           LH  T +V   L R+ FF QTK  + + +S+   P+   +    N      LF  T+ L
Sbjct: 41  LHHDTFLVNLLLKRTLFFRQTK-YSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDL 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,643
Number of Sequences: 28952
Number of extensions: 289247
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)