Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l09f
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.077
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_35074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.1  
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                 28   6.7  
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   28   6.7  
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)               28   6.7  
SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)                27   8.8  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 16/76 (21%), Positives = 36/76 (47%)
 Frame = +1

Query: 100 NTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRTTS 279
           + L+   ++ K CC C  +RIG  +LG+  +F ++    +L  +  +       + +T  
Sbjct: 8   DNLNDDGTVMKTCCCCMDVRIGTIVLGFCHLFIHIAGVVVLAQMLLHPEVYEEKYYQT-- 65

Query: 280 FDSIDLEELSEPTTTL 327
           + ++    +S P  T+
Sbjct: 66  YGTVPRSAISNPNKTM 81


>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 193  FTNVYNTGLLITLTNYIGAGSHSFDRTTSFDSIDLEELSEPT 318
            F  V  +GLL+ +TN+ G G+ + ++      +     SEPT
Sbjct: 1491 FRTVKRSGLLLVITNHTGKGAVTLEQLEGQIVLSFTSESEPT 1532


>SB_35074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 382 LLMTIVINAAWLLVNIACVVGLHRRRPGNIKFYVLFAACRLVLVFAGL---VYLTMTITT 552
           L +TI+    WL + +  +V  HR        ++  A+  L+L+ +G+   VY    + T
Sbjct: 237 LTVTIIYATCWLPILVLYIVSFHRPELVAYGSFIYKASVALILLNSGINPFVYALQILAT 296

Query: 553 P 555
           P
Sbjct: 297 P 297


>SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 388 MTIVINAAWLLVNIACVVGLHRRRPGNIK 474
           ++ + N +W+LV +AC++   RR+P  +K
Sbjct: 24  ISAISNLSWILVGLACLLQEVRRKPQPLK 52


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 540  HCQVH*TSKDQDEAAGCEEDVELDVTRSPPV*SDHTSDVDKQPCSIYYYRHQKH 379
            HC+    S++++E+A  +E+ ELD  +        TS   + PC     +H +H
Sbjct: 1283 HCKTS-DSEERNESAESDEENELDRVQRLTSLRSFTSGQPESPCPECQIQHHRH 1335


>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 269

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 106 LSSTSSLGKKCCYCFPLRIGCFILGYLTM 192
           L+S  S G+ CC+   L  GCF++  L +
Sbjct: 194 LTSDCSEGESCCHRTCLPFGCFVVSLLAL 222


>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 349 ESPLLSGVGFVLLMTIVINAAWLLVNIACVVGLHRRRPGNIKFYVLFAACRLVLVFAGLV 528
           ++P+L  +GFV L TI      +L N +  V +H        F+ + +   +  +FAG  
Sbjct: 39  DTPMLWAIGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFY 98

Query: 529 YLTMTIT 549
           +    IT
Sbjct: 99  FWFGKIT 105


>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
          Length = 191

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 106 LSSTSSLGKKCCYCFPLRIGCFILGYLTM 192
           L+S  S G+ CC+   L  GCF++  L +
Sbjct: 116 LTSDCSEGESCCHRTCLPFGCFVVSLLAL 144


>SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)
          Length = 633

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 94  PYNTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLL 222
           PYNT     S    C YC  +  G  IL    + T VY++  L
Sbjct: 486 PYNTDEPAESWDMLCYYCNQVPCGNQILNPCRLCTRVYHSDCL 528


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,357,670
Number of Sequences: 59808
Number of extensions: 343962
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)