Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l08r
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    28   8.3  

>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
            24665465-24665887,24665960-24666252,24666332-24666605,
            24666856-24667358,24667464-24667785,24667875-24668220,
            24668339-24668997,24669524-24669625,24669656-24670052,
            24670155-24670270,24670360-24670386
          Length = 1704

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = -3

Query: 224  NANSVRT*DCRIXVLFWV*LSEQQFFFSIGPCTIVAVAIRVSFALRKIKMSILE 63
            N N +R    RI    W  LSE  FF S+G    ++VAI V  +LR++ M  LE
Sbjct: 1052 NVNRIRLVWSRI----WKVLSE--FFVSVGLLENLSVAIFVMDSLRQLAMKFLE 1099


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,561
Number of Sequences: 37544
Number of extensions: 190438
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)