Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l08r
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                28   6.4  
SB_21623| Best HMM Match : AAA_5 (HMM E-Value=0.18)                    28   6.4  
SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1)                   28   8.5  

>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 398 VSLPHYVLTLAPIFXNLIQYVXVGFKCPQIR 490
           ++LP +V    P+F  LI  +  G  CP++R
Sbjct: 57  MNLPKFVFEDVPLFLGLIADLFPGLDCPRVR 87


>SB_21623| Best HMM Match : AAA_5 (HMM E-Value=0.18)
          Length = 260

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 398 VSLPHYVLTLAPIFXNLIQYVXVGFKCPQIR 490
           ++LP +V    P+F  LI  +  G  CP++R
Sbjct: 185 MNLPKFVFEDVPLFLGLIADLFPGLDCPRVR 215


>SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1)
          Length = 248

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 617 SMWRLHC*XEGQDXNSKSRQSNELLDQ 537
           S+W LHC   GQ  N +S +  E +D+
Sbjct: 6   SIWLLHCIRHGQHRNVESGERQEAVDR 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,949,149
Number of Sequences: 59808
Number of extensions: 257094
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)