Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l08r
         (706 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128034-1|BAC87239.1|  130|Homo sapiens protein ( Homo sapiens ...    32   1.7  
AK125796-1|BAC86296.1|  617|Homo sapiens protein ( Homo sapiens ...    30   7.0  

>AK128034-1|BAC87239.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46153 fis, clone TESTI4001037. ).
          Length = 130

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 335 FFNLTLFVYSFIX*FRFSXFIVSLPHYVLTLAPIFXNLIQYVXVGFKCPQI 487
           F  L+ F + F+  F FS F+ SLP ++ +  P F     ++   F C  I
Sbjct: 24  FLFLSFFFFLFLS-FSFSFFLFSLPSFLPSFLPSFLPSFPFLFFSFYCDMI 73


>AK125796-1|BAC86296.1|  617|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43808 fis, clone TESTI4001148, weakly  similar
           to Dynein beta chain, ciliary. ).
          Length = 617

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 398 VSLPHYVLTLAPIFXNLIQYVXVGFKCPQIR 490
           ++LP +VL   P+F  LI  +  G  CP++R
Sbjct: 522 MNLPKFVLEDVPLFLGLISDLFPGLDCPRVR 552


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,482,726
Number of Sequences: 237096
Number of extensions: 1129736
Number of successful extensions: 1550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)