Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l08f
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    25   0.44 
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    23   1.3  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.3  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   5.4  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 23/75 (30%), Positives = 28/75 (37%)
 Frame = -2

Query: 549 DVEDCF*QLNVSRREETGCHRGVDVSSRHVTDALHNRSNEQAKAQRNAGGVGRCAGVDGD 370
           DVE     LNV         RG D     +   ++ RS   A A  N  G    AG  GD
Sbjct: 233 DVEGSQKLLNVDASIRGWIERGADPGKLVLGLGVYGRSFTLASASNNKLGAPIVAG--GD 290

Query: 369 AGGHANRSKEEGANQ 325
           AG +       G N+
Sbjct: 291 AGRYTGERGMMGYNE 305


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 468 RHVTDALHNRSNEQAKAQRN 409
           RH+ DALH   ++ ++ Q+N
Sbjct: 65  RHLPDALHTECSKCSETQKN 84


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 380 LMVMQAATPIEVRRKVPTSSATSCLQISLLSVTSDSP 270
           ++   + TP+ +     TSS+ S   ++      DSP
Sbjct: 150 ILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSP 186


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
          protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 15 CVPRRPHAPQ 44
          CV +RPH+P+
Sbjct: 18 CVRKRPHSPE 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,487
Number of Sequences: 336
Number of extensions: 1879
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)