Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l08f
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    44   1e-05
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   2.4  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   3.2  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   5.6  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.4  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   9.8  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   9.8  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +1

Query: 304 WRQLVAELVGTFLLTSIGVA----ACITINASTAPHTTSIALCFGLLVGSIVQGIGHVSG 471
           +R+  AE +GT +L   GV     A +T  A  +  + S A  FG ++G  + G   +SG
Sbjct: 310 FREGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAG--GISG 367

Query: 472 GHINPAVTAGLFAAGDIKLLKAIFYI 549
           GH+NPAVT  L         K   YI
Sbjct: 368 GHVNPAVTISLAIFRKFPWYKVPIYI 393



 Score = 29.5 bits (63), Expect = 0.34
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 304 WRQ-LVAELVGTFLLTSIGVAACITINASTAPHTTSIALCFGLLVGSIVQGIGHVSGGHI 480
           WR     E +GT +L  +G    I  + ++ P     A   GLL+ +I   +G+ +   +
Sbjct: 443 WRNAFFDEFIGTAVL--VGCLFAILDDTNSPPTQGMTAFIVGLLIAAIGMALGYQTSFTL 500

Query: 481 NPAVTAG 501
           NPA   G
Sbjct: 501 NPARDLG 507


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +1

Query: 175 RVLPTTFSRYFS*ENSKITMATKTTEKTSSIIGLSDVTDNKLIWRQLVAELVGTFLLTSI 354
           RVLP   + YFS    ++  A     KT++  G+++V    ++   +V  L+ +  L  +
Sbjct: 38  RVLPACLNIYFSNLLPELAFALDMFAKTNNSFGVNEVLLASVL-GSVVFALLSSQPLCIV 96

Query: 355 GVAACITI 378
           GV   IT+
Sbjct: 97  GVTGPITV 104


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 295 KLIWRQLVAELVGTFLLTSIGVAACITINASTAPH 399
           +L+  +LV + +   L T      C TI AS  PH
Sbjct: 535 ELVGNELVGDPLEVTLFTQFNGTFCATIRASNTPH 569


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 166 YSGRVLPTTFSRYFS*ENSKITMATKTTEKTSSIIGLSDVTDNKL 300
           Y+G VLP+ F R+   ++S +              GL+D+ D  L
Sbjct: 394 YTGIVLPSLFDRFKERKSSLVHSLLDAANAIFESCGLNDIMDETL 438


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 113 RATNNNYCYYSLINSTENKL 54
           R + N +C+YS +N   N++
Sbjct: 673 RTSGNRFCHYSSLNGNHNRI 692


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 176 EFFRRLFLDIFPEKIQK*QWQRKLLRRQAPSS 271
           +F R   +D   EKI K  W+ K +R +A ++
Sbjct: 164 DFIRCKIIDSHLEKIAKVHWETKFIRIEAANA 195


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 292 NKLIWRQLVAELVGTFLLTSIGVAACITINASTAPHTTSIALCFGLL-VGSIV 447
           N L W   ++E    FLLT + V+  +    +      +I L  GLL VG  V
Sbjct: 467 NHLFWAASISEKNEVFLLTELNVSTLLQPGINHVDCHDNIGLHCGLLPVGQSV 519


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 388 TAPHTTSIALCFGLLVGSIVQGIGHVSGGHI 480
           TAP    IA C  LL G+I  GIG +  G I
Sbjct: 200 TAPQ---IATCLALLAGAITCGIGLLRLGFI 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,828
Number of Sequences: 5004
Number of extensions: 30790
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)