Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l08f
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22077| Best HMM Match : MIP (HMM E-Value=0)                         74   7e-14
SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)               56   1e-08
SB_22128| Best HMM Match : MIP (HMM E-Value=9.1e-08)                   54   8e-08
SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   9e-06
SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)                     31   0.47 
SB_54472| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.47 
SB_42853| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_46267| Best HMM Match : zf-GRF (HMM E-Value=0.0093)                 28   4.4  
SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           27   7.7  
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               27   7.7  
SB_13997| Best HMM Match : EGF_CA (HMM E-Value=1.2e-05)                27   7.7  

>SB_22077| Best HMM Match : MIP (HMM E-Value=0)
          Length = 374

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 39/110 (35%), Positives = 58/110 (52%)
 Frame = +1

Query: 223 KITMATKTTEKTSSIIGLSDVTDNKLIWRQLVAELVGTFLLTSIGVAACITINASTAPHT 402
           K T+AT        I G+SD+   +  W  + AE + TF    +   +C+  + +  P  
Sbjct: 22  KSTVATLAVNMKCEI-GISDLKKEEF-WVSVFAEFLATFFFVFMVCGSCLLWDKNDPPAV 79

Query: 403 TSIALCFGLLVGSIVQGIGHVSGGHINPAVTAGLFAAGDIKLLKAIFYIV 552
             IALC GL + +    +GH SGGHINPAVT G  ++  I +L+ + YIV
Sbjct: 80  QHIALCAGLGIATWAMAVGHWSGGHINPAVTVGFLSSNKIAILQGVCYIV 129



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 460 HVSGGHINPAVTAGLFAAGDIKLLKAIFYIV 552
           H+SGGHINPAVT        +  L+  FY++
Sbjct: 192 HISGGHINPAVTISFMIVRKVSFLRGAFYVI 222


>SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)
          Length = 365

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 33/87 (37%), Positives = 45/87 (51%)
 Frame = +1

Query: 292 NKLIWRQLVAELVGTFLLTSIGVAACITINASTAPHTTSIALCFGLLVGSIVQGIGHVSG 471
           ++  W +++AE + T L  SI V      N ST P  T +AL  GL  G+    +  VS 
Sbjct: 13  SRRFWTEILAEFIITSLFVSI-VCGTALQNWSTPPTLTHMALNSGLAAGTFAMCMWDVSS 71

Query: 472 GHINPAVTAGLFAAGDIKLLKAIFYIV 552
           G  NPA+T G    G   LL+ IFYI+
Sbjct: 72  GLFNPALTIGFLITGKKTLLQTIFYIM 98


>SB_22128| Best HMM Match : MIP (HMM E-Value=9.1e-08)
          Length = 235

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 28/92 (30%), Positives = 50/92 (54%)
 Frame = +1

Query: 277 SDVTDNKLIWRQLVAELVGTFLLTSIGVAACITINASTAPHTTSIALCFGLLVGSIVQGI 456
           +D+     I    + E+ G+ L   +G A+ ++ ++  +    SIAL +G+L   +V  +
Sbjct: 15  NDMESTGFIISASLVEIFGSLLYGFLGCASTVSFDSPRS--IESIALSYGILYAVLVYIL 72

Query: 457 GHVSGGHINPAVTAGLFAAGDIKLLKAIFYIV 552
              SGG++NP VT  L     + +LKA+FYI+
Sbjct: 73  APFSGGYVNPIVTIALLLTRKVSVLKAVFYII 104


>SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +1

Query: 268 IGLSDVTDNKLIWRQLVAELVGTFLLTSIGVAACITINASTAPHTTSIALCFGLLVGSIV 447
           +G+ +V    L W  + AE +GT LL    V+A  ++     P T  IAL  G  + ++ 
Sbjct: 5   VGVDEVFTGSL-WICVFAEYLGT-LLFMFSVSAA-SLRWEGTPSTLEIALAAGFSMATVT 61

Query: 448 QGIGHVSGG--HINPAVTAGLFAAGDIKLLKAIFYIV 552
           Q    VS    H NPAVT   F AGD  L+ +  Y++
Sbjct: 62  QVFRWVSRPLVHANPAVTVASFLAGDTSLVASFLYVI 98


>SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 24/78 (30%), Positives = 41/78 (52%)
 Frame = +1

Query: 292 NKLIWRQLVAELVGTFLLTSIGVAACITINASTAPHTTSIALCFGLLVGSIVQGIGHVSG 471
           +K ++   +AEL+ + +   +  A+C++     AP    IAL  GL   ++V  + HV+G
Sbjct: 62  HKQLFIGALAELLASHVFVFLVCASCVSWPHFQAPSVQHIALTAGLTTSTLVMVMSHVTG 121

Query: 472 GHINPAVTAGLFAAGDIK 525
           G INPAV   +     +K
Sbjct: 122 GQINPAVAVAMVVTRRVK 139


>SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)
          Length = 345

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 468 RHVTDALHN-RSNEQAKAQRNA-GGVGRCAGVDGDAGGHANRSKEEGANQFRDQLP 307
           RH+     + + NE   A RN  G  G C G+ GDAGG   +    G    R  LP
Sbjct: 66  RHIMQTSDDDKKNEVINATRNTQGDAGGCGGMRGDAGG--MQGDAGGCKGMRSHLP 119


>SB_54472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 462 VTDALHNRSNEQAKAQRNAGGVGRCAGVDGDAGGHANRSKEE 337
           VT A H+R N +AK+ RN    G     + + G HA  S ++
Sbjct: 37  VTSAAHSRLNSRAKSTRNVRRTGVKGNGNNNGGTHAGDSNDD 78


>SB_42853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +1

Query: 292 NKLIWRQLVAELVGTFLLTSIGVAACITINASTAPHTTSIALCFGLLVGSIVQGIGHVSG 471
           NK+ W    A L GT  L S+G A    I+ +  P +  I L F      +  G+G V G
Sbjct: 80  NKIRWLGYGAYLTGTTPLFSLGPA---YIDENVHPKSMPIYLSFWYAATILGPGLGFVVG 136

Query: 472 GH 477
           G+
Sbjct: 137 GY 138


>SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 447 HNRSNEQAKAQRNAGGVGRCAGVDGDAGGHANRSKEEG 334
           + R+N+     R  GG G  + + G AGG +N++  EG
Sbjct: 431 NGRNNKNFGGSRGTGGEGGKSFLAGGAGGRSNQNDVEG 468


>SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 145 YEATRSYYSGRVLPTTFS-RYFS*ENSKITMATKTTEKTSSIIGLS 279
           Y+ T+  Y G  L   +  RY       ITM T+  E  SSI+G++
Sbjct: 243 YDVTKDIYEGTELLVWYGDRYLKYMGIPITMKTRIAEVDSSIMGVN 288


>SB_46267| Best HMM Match : zf-GRF (HMM E-Value=0.0093)
          Length = 342

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 444 NRSNEQAKAQRNAGGVGRCAGVDGDAGGHANRSKEEGANQ 325
           NRS   AK +R+ GG   C G  GDAG   + +  E A +
Sbjct: 136 NRSRSPAKRRRSGGG--GCGGGGGDAGCSGSDTDVEEAER 173


>SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 516 SRREETGCHRGVDVSSRHVTDALHNRSNEQAKAQRNAGGVGRCAGVDGDA-GGHANRSKE 340
           +RR +T   RG     +      H++  E+ +  R  GG       D +  GG   + KE
Sbjct: 284 NRRWKTQSDRGGRAPPQRRRTEYHDQQEERNEGYRRGGGKREKEKEDDNRRGGRRRQEKE 343

Query: 339 EGANQFRDQ 313
           +  +QFR++
Sbjct: 344 DVNHQFRNE 352


>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 513 RREETGCHRGVDVSSRHVTDALHNRSNEQAKAQRNAGGVGRCAGVDGDAGGH 358
           RR E  C   VD+ +R       N +N      RN G +G+  G +G   G+
Sbjct: 744 RRGEFNCPTDVDIDNRGRVIICDNGNNRVQVLNRNGGFIGK-FGREGTGNGY 794


>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 373 TINASTAPHTTSIALCFGLLVGSIVQGIGHV 465
           ++NA T+PH  S      ++  S VQG+G +
Sbjct: 727 SVNAPTSPHNISSFELLSIIGSSAVQGLGDI 757


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 402 GVGRCAGVDGDAGGHANRSKEEGANQFRDQLPPDQLVVRYI 280
           G GR     GD  G +NRS  +   +F+++LPP      YI
Sbjct: 103 GFGRRGHAVGDIPGISNRSPPKQNVKFQEKLPPGGRGTPYI 143


>SB_13997| Best HMM Match : EGF_CA (HMM E-Value=1.2e-05)
          Length = 770

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 492 HRGVDVSSRHVTDALHNRSNEQAKAQRNAGGVGRCAGVDG 373
           HR V+V +  +TDA H  +   A+ + +A     C   DG
Sbjct: 660 HRNVEVVAESMTDAKHRNAEVVAEGKTDAKHRNGCRRFDG 699


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,816,773
Number of Sequences: 59808
Number of extensions: 268123
Number of successful extensions: 742
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)