Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l08f
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.67 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 279 RCNGQQADLEAAGRGTG 329
           +CN ++ D+E  GRG G
Sbjct: 67  QCNDKKTDIEETGRGKG 83


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 283 VTDNKLIWRQLVAELVGTFLL 345
           V D   +W   +A +VGTF++
Sbjct: 484 VLDRLFLWIFTIASIVGTFII 504


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 391 APHTTSIALCFGLLVGSIVQG--IGHV 465
           +P+T + A+   L++GSI+ G  IG++
Sbjct: 34  SPYTVTQAILIALVLGSIIVGTVIGNI 60


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 513  RREETGCHRGVDVSSRHVTDALHNRSNEQAKAQR 412
            +++E G   G+ V  +   ++ +NRS EQA +Q+
Sbjct: 1546 QQKEYGAVSGLVVQLQRGYNSGNNRSGEQANSQQ 1579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,284
Number of Sequences: 438
Number of extensions: 2535
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)