Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l06f
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) 178 2e-45
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06) 31 0.91
SB_59295| Best HMM Match : SET (HMM E-Value=0) 30 1.6
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_57317| Best HMM Match : SSF (HMM E-Value=0) 28 6.4
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 28 6.4
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
Length = 379
Score = 178 bits (434), Expect = 2e-45
Identities = 78/159 (49%), Positives = 112/159 (70%)
Frame = +3
Query: 105 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 284
P Y DLGK+A DVF KGY FG K+DLKT +++GVEF + +S ++GKVFGSL +K+
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYK 159
Query: 285 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 464
DYG++ +EKW TDN L+++IT++D+IA GLK+ + TFAP TG K+ K+KT++ D +
Sbjct: 160 YSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQDYL 219
Query: 465 AVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKA 581
++D D AGP V +AV+ Y+GW AG +DT K+
Sbjct: 220 HATGDVDFDFAGPTVQGSAVVGYEGWHAGYQVAYDTSKS 258
>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
Length = 672
Score = 30.7 bits (66), Expect = 0.91
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = -3
Query: 499 PAKSRSKLVFTATVSLVNEVFNFPVLVPVCG-AKVPSRVTLRPAAILSWIVMSVANVLSV 323
P K VF AT+ L + V N V+ CG A+ P L ++ +V +++ LSV
Sbjct: 26 PVKGILLGVFAATI-LGSLVGNIAVIRATCGMARTPVTYILVMNMAVAELVYTLSMSLSV 84
Query: 322 FHFSVKVKP*SFTANLEERLPKTFPLSWLEVIP 224
+ ++ P F L + + +P+ + VIP
Sbjct: 85 IYLELEYWPYGFRCKLSDIGYRPYPILFPIVIP 117
>SB_59295| Best HMM Match : SET (HMM E-Value=0)
Length = 1230
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 321 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 470
+TD N L +D + +DK K E T + TGKL+T + DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859
>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 222 SGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 365
SG+ +ESG+ SL+ A L T+ NTD T TD T Q+K
Sbjct: 65 SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111
>SB_57317| Best HMM Match : SSF (HMM E-Value=0)
Length = 389
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 260 KNLSAFLVGGDSAGEFNTRLALG 192
KNLS +++GG S G F T L+ G
Sbjct: 48 KNLSDYILGGRSLGSFVTALSAG 70
>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 972
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 367 ILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVNSTPDSLL 194
+ ++ S ANVL V+ SV +KP LEE L W + ++TP++++
Sbjct: 871 LCNYTYSSAANVLEVYELSVGIKPSEVEILLEELKSSGALLEWPQD---ASTTPETVI 925
>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 856
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 402 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQG 539
+AP K +L T F +DT AVN N ++ + +NY G
Sbjct: 172 YAPCNKPKLKRLLTRFVSDTGAVNQNFQTAMSEKFPVSSVKMNYLG 217
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 444 SFTNDTVAVNTNLDLDLAGPVVDVAAVLN 530
++TN A++T +AGPVV V+A LN
Sbjct: 213 NYTNPICALHTVTKTSVAGPVVTVSAPLN 241
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 327 DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 476
++TLA +ITI + +A G + E TFAP+T TK + + T T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 333 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLD 485
T T + + +AAG V +GTFAP T +++F T + N+D
Sbjct: 1652 TPITSVANESTVAAGTTVLPDGTFAPGTNVAG---ESTFAPVTSVASENID 1699
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,343
Number of Sequences: 59808
Number of extensions: 358707
Number of successful extensions: 954
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -