Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l05f
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)                     33   0.12 
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)                33   0.21 
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)                33   0.21 
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.37 
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     30   1.5  
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   6.0  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 968

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +2

Query: 185 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA---VNHPEFSE 355
           C G +++    ++ A C  G  + P+Y +++ G   R+ P      H     + HP ++ 
Sbjct: 93  CGGSLVSPTWVVTAAHCIAGSSHTPSY-KVVTGEHIRNSPEGTEQTHDVKRIITHPTYNS 151

Query: 356 ENYDKDVSIVRVTHAI 403
                D++++ ++  +
Sbjct: 152 PQLSNDIALIELSSPV 167


>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
          Length = 275

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 340 MVNSK-VNIRYFTGLTATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTSALLE 176
           M+NS+ +N   FTG   TGR    AT   +V+  +E GS   ++V+ + +    +E
Sbjct: 215 MINSRGINALTFTGSLETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVE 270


>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
          Length = 333

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 146 EVFLPILNQW--FQQCAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRSEPGEIS 316
           E F+  +  W    QC+G ++   H ++ A C H G+++      I+ G S  S   E+ 
Sbjct: 138 EPFVSSVKLWSDVMQCSGTLIGPCHVITAAHCIHNGKWFVSPLTAILVGVSNTSSTDELD 197

Query: 317 YVHFAV 334
           Y  FAV
Sbjct: 198 Y--FAV 201


>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
 Frame = +2

Query: 161  ILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAV-- 334
            I N   Q C G ++T    ++ A C   +  +PA  ++  G+  R+ P     +  ++  
Sbjct: 649  IYNSGRQFCGGTLVTPEWVITAAHCVVDK--NPASIQVRLGAQDRTSPDPSVEMRISIRS 706

Query: 335  --NHPEF-SEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQ 505
              NHP++ S +    D++++R++                            + GWGT   
Sbjct: 707  IHNHPDYGSPKRSSNDIALLRLSRPTILTHRINLACMPNDTVHFPNGTMCYITGWGTLSS 766

Query: 506  GGS 514
            GGS
Sbjct: 767  GGS 769


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +2

Query: 146  EVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSS---RRSEPGEIS 316
            +V L +     Q+C G ++     L+ A CF   F  P    +  G S   RR   G+  
Sbjct: 1253 QVALTLSGNPVQRCGGALIAADWVLTAAHCF-DRFSMPPEWTVQVGVSDMRRRDGKGQSL 1311

Query: 317  YVHFAVNHPEFSEENYDKDVSIVRVTHAIHF 409
             +     HP+++  +++ D++++++     F
Sbjct: 1312 SIKAIFVHPQYNSSSHEHDLAVLQLQQPAEF 1342


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +2

Query: 176 FQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA--VNHPEF 349
           F  C G ++++   ++ A C H       Y  ++    +R        +  +  + HP++
Sbjct: 129 FHTCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKY 188

Query: 350 SEENYDKDVSIVRVTHAIHF 409
           ++     D++++ +   + F
Sbjct: 189 NDRRIVNDIALLELATPVQF 208


>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 338 HPEFSEENYDKDVSIVRVTHAIHF 409
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222


>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 131 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 253
           +LV +E + P  N+W ++    +LT   Y STA    G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -1

Query: 535 VEVAVRYTAALNGSSPSEQI-NKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVI 359
           +++ V Y AA+   S   Q  N+N L Y +   D    +   A +  M  SY+  +  + 
Sbjct: 303 MKIKVNYVAAVQDESTYSQFYNENNLKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMH 362

Query: 358 LLREFGMVNSK 326
           L +  G++N +
Sbjct: 363 LAKNRGLINGE 373


>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 201 SPTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLLTIPNSL 353
           SP+T+  Q++P +  +   L T + S +LPV       + FT    IP  +
Sbjct: 143 SPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQSFRMTFTPPSMIPKPI 193


>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 898

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 2/114 (1%)
 Frame = +2

Query: 185 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSE-PGEISY-VHFAVNHPEFSEE 358
           C G ++     ++ A C         Y  ++    R    P + ++ +     H +FS  
Sbjct: 57  CGGSLIAKDWVVTAAHCVDRNPTPSGYTVVVGAHHRTGNTPVQNTFRLKQLFKHEQFSMR 116

Query: 359 NYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVS 520
           +   D++++++   +                         + GWG TV GGS +
Sbjct: 117 HLKNDIALLQLHEPVKASDKVNTVCLPSSGSRAQAGARCYITGWGRTVGGGSAA 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,126,896
Number of Sequences: 59808
Number of extensions: 438689
Number of successful extensions: 1074
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)