Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l02r
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.8  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   1.8  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   1.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   5.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 449 IWLNRKRLLVVTLRTTKP*PSFVNKLHSLTESTTLG 342
           I+L   R  V   R  KP   F   L  LTE  TLG
Sbjct: 483 IYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLG 518


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 549 PARTPYHWDNSTS 511
           PAR+PY W   TS
Sbjct: 119 PARSPYEWIKKTS 131


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 549 PARTPYHWDNSTS 511
           PAR+PY W   TS
Sbjct: 119 PARSPYEWIKKTS 131


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = -1

Query: 696 HQHAASWVAVTYQGEEIGMRDGYVSWEDTVDIEACNRGDPDTYHLYSRDPARTPY 532
           H H +  VA  +  +       Y S+  ++ +          +HL +R P  +PY
Sbjct: 14  HHHQSGSVAGHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHHHLQARPPQDSPY 68


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 477 PVAEDYQEINLAKQKETARSHFKNYQALTKLRKQATLSH 361
           PV    QE+    +K T + H KN     K+R    L +
Sbjct: 489 PVKISVQEVLNRVRKPTKKLHLKNSPISKKVRPPQVLCY 527


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 603 IEACNRGDPDTY 568
           +E C+RGD  TY
Sbjct: 532 VEYCSRGDLQTY 543


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,190
Number of Sequences: 336
Number of extensions: 3188
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)