Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l02r
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    54   1e-08
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    28   1.1  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    27   2.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   7.9  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
 Frame = -1

Query: 576 DTYHLYSRDPARTPYHWDNSTSAGFS-TSTNTWLPVAEDYQEINLAKQKETARSHFKNYQ 400
           D  +  +RD  RTP HWD+S + GF+      W+ V  DY+E N A Q     S +  + 
Sbjct: 429 DIVNKRARDNGRTPMHWDSSPNGGFTKAGVKPWMRVTNDYKEWNAANQVNDPESPYTFWS 488

Query: 399 ALTKLRKQA--TLSHGEYDIRALSDRTFY-LVRSLPTHDTYVLL 277
              +LRK+    + +G +++ +  D +    VR   T+   +LL
Sbjct: 489 KALELRKELKDAVVYGSFELISEEDPSIVAFVRESSTYKLIILL 532


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 613 VFPADIAVSHADLLALVRDSYPGSS 687
           +FP D  +S A LL+L+R  Y G++
Sbjct: 159 LFPRDAFISQASLLSLIRHEYRGNA 183


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -3

Query: 367 LSRRVRH*GPIRQDLLPREKFTYSR--HIRSS 278
           L+RR++    IR D+LPR+ F + R  H++SS
Sbjct: 70  LTRRLQQ---IRHDILPRQPFRFQRALHVKSS 98


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 4   LFTIIYILVTATINYFKYNILYEKRNPYHNT 96
           +F +IY ++   +  +KY ++Y+  +P H+T
Sbjct: 657 VFGLIYFIIGFLV--YKYELIYQMEHPQHST 685


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -1

Query: 270 VSERRDTVDLGRVPHLTLPATVYVSSIHSARLAGHEITSSQLSLEAGEALVLKAQPI 100
           V ER   ++LG     ++ ATV VSS  SA + G+ +   + S +  + +VL   P+
Sbjct: 768 VVERPPPMNLGPHAFKSVQATVKVSSTESAVIFGNIVYGGKAS-DEDKIVVLNGIPV 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,260
Number of Sequences: 5004
Number of extensions: 52601
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)