Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l02r
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)             33   0.22 
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_45395| Best HMM Match : PBAN (HMM E-Value=0.67)                     31   0.68 
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_18040| Best HMM Match : C1_3 (HMM E-Value=0.055)                    29   4.8  
SB_36322| Best HMM Match : DUF782 (HMM E-Value=1.4)                    28   6.3  
SB_16963| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_2731| Best HMM Match : Steroid_dh (HMM E-Value=2.8)                 28   6.3  
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         28   6.3  
SB_12836| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 1/188 (0%)
 Frame = -1

Query: 672 AVTYQGEEIGMRDGYVSWEDTVDIEACNRGDPDTYHLYSRDPARTPYHWDNSTSAGFSTS 493
           AV Y G+EIG+ D  +S  +  D               SRDP R    W+N+ + GFS +
Sbjct: 376 AVMYYGDEIGLMDADISKGEIND---------------SRDPCRGIMQWENAENYGFSQA 420

Query: 492 TNTWLPVAEDYQEINLAKQKETARSHFKNYQALTKLRKQATLSHGEYDIRALSDRTFYLV 313
              WLP   D  + N+  QK    S     + + KLR      HG  + R +   +  L 
Sbjct: 421 KKLWLP-GTDNNKTNVEVQKLDETSMLVLTRKILKLRNAEKAFHG-LNFRLIHVDSSILA 478

Query: 312 RSLPTH-DTYVLLFNVSERRDTVDLGRVPHLTLPATVYVSSIHSARLAGHEITSSQLSLE 136
            +  T    YV++ N   R  +  L R   L     V + S  +    G E+  +++S+ 
Sbjct: 479 YTRSTWLSKYVVIINFGSRIWSGGLER--GLKKKGVVIIDS-STIMAEGTELDMNRISIH 535

Query: 135 AGEALVLK 112
            G ALV+K
Sbjct: 536 PGHALVVK 543


>SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)
          Length = 567

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = -1

Query: 465 DYQEINLAKQKETARSHFKNYQALTKLRKQATLSHGEYDIRALSDRTFYLVRSLPTHDTY 286
           DYQ I   KQ    R H K+  +  K +KQAT  H    +R +    F+L RS+      
Sbjct: 380 DYQRILRRKQDAMLRRH-KSLMSRIK-KKQATNMHHRRALRVVLQPCFWLARSIRRRTNS 437

Query: 285 VLLFN 271
            L+F+
Sbjct: 438 TLIFS 442


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 699  HHQHAASWVAVTYQG-EEIGMRDGYVSWEDTVDIEACNRGDPDTYHLYSRDPARTP 535
            +H+     V +  +G E+ G++  YV  +D+VD+E      PD  H+ S D  RTP
Sbjct: 4545 NHEDGVDDVIIAMEGVEDDGIQVLYVGVDDSVDLEELKIVAPDDNHVISAD-GRTP 4599


>SB_45395| Best HMM Match : PBAN (HMM E-Value=0.67)
          Length = 187

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 46  YFKYNI--LYEKRNPYHNTLYRLGFQNESLS 132
           ++KY +    EK +PYHNT+ R  F  E++S
Sbjct: 157 WYKYELDKFMEKTSPYHNTILRAVFNQENIS 187


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 603  IEACNRGDPDTYHLYSRDPARTPYHWDNSTSAGFSTST 490
            +E      P+ +  +     R+PYH+D+   A  STST
Sbjct: 2770 LETRAMASPNQHRTFEMQALRSPYHYDDDDQANTSTST 2807


>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 504 FSTSTNTWLPVAEDYQEIN--LAKQKETARSHFKNYQALTKLRKQA 373
           FSTS+ TWL   +D  +    L K   +   HF +Y   T +++ A
Sbjct: 136 FSTSSKTWLIAQQDCHQSGGYLVKVDNSDEQHFLSYMMKTVMKQAA 181


>SB_18040| Best HMM Match : C1_3 (HMM E-Value=0.055)
          Length = 108

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 688 CCFLGSCHVPRRGDRHERRLCQ 623
           CC +   HVP + D+H   LCQ
Sbjct: 41  CCVICGAHVPFKQDKHIAMLCQ 62


>SB_36322| Best HMM Match : DUF782 (HMM E-Value=1.4)
          Length = 150

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 46  YFKYNI--LYEKRNPYHNTLYRLGFQNESLS 132
           ++KY +    EK + YHNT+ R  F  E++S
Sbjct: 120 WYKYELDKFMEKTSSYHNTILRAVFNQENIS 150


>SB_16963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 46  YFKYNI--LYEKRNPYHNTLYRLGFQNESLS 132
           ++KY +    EK + YHNT+ R  F  E++S
Sbjct: 68  WYKYELDKFMEKTSSYHNTILRAVFNQENIS 98


>SB_2731| Best HMM Match : Steroid_dh (HMM E-Value=2.8)
          Length = 231

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 46  YFKYNI--LYEKRNPYHNTLYRLGFQNESLS 132
           ++KY +    EK + YHNT+ R  F  E++S
Sbjct: 201 WYKYELDKFMEKTSSYHNTILRAVFNQENIS 231


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -1

Query: 468 EDYQEINLAKQKETARSHFKNYQALTKLRKQATLSHGEYDIRALSDRTFYLVRSLPTHDT 289
           E   ++ LA+ ++  RSHF    A+   ++ ATL+      R   D   +LVR+L  H  
Sbjct: 77  ESKTDLTLAQLRQILRSHFHERSAIELHQQLATLAQ-----RQNEDAQNFLVRALEIHQR 131

Query: 288 YVLLFN 271
             LLF+
Sbjct: 132 --LLFS 135


>SB_12836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 678 WVAVTYQGEEIGMRDGYVSWED-TVDIEACNRGDPDTYH 565
           W A       +G+  G VSW   TVD   CN G  D Y+
Sbjct: 118 WSANKLGRSTMGLHPGRVSWGCVTVDASNCNSGGYDCYN 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,858,517
Number of Sequences: 59808
Number of extensions: 406593
Number of successful extensions: 1062
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)