Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l02r
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05632.1 68417.m00875 hypothetical protein                          28   5.2  
At1g64360.1 68414.m07294 expressed protein                             28   5.2  
At3g24560.3 68416.m03086 expressed protein  contains Pfam profil...    27   9.0  
At3g24560.2 68416.m03084 expressed protein  contains Pfam profil...    27   9.0  
At3g24560.1 68416.m03085 expressed protein  contains Pfam profil...    27   9.0  

>At4g05632.1 68417.m00875 hypothetical protein
          Length = 197

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = -1

Query: 531 HWDNSTSAGFSTSTNTWLPVAEDYQEINLAKQKETARSHFKNYQALTKLRKQATLSHGEY 352
           H   +T    ++S NT  P+  D   ++  KQ  +A  H K Y  LTKLR+    +   +
Sbjct: 39  HGTTTTCILVASSCNT-RPLGSDLVSLSRTKQG-SALEHHKLYMHLTKLRQSVLEASSIH 96

Query: 351 DIRALSDRTFYLVR 310
           D     DR   + R
Sbjct: 97  DRNDNVDRELLVDR 110


>At1g64360.1 68414.m07294 expressed protein
          Length = 85

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = -1

Query: 606 DIEACNRGDPDTYHLYSRDPARTPYHWDNSTSAGFSTSTNTWLPVAEDYQEINLAKQKET 427
           D ++ N G P T   Y+   AR+   WD    +G + S       A+    IN       
Sbjct: 23  DSDSDNEGAPMTVGGYTEFVARSDSDWDEPVYSGKARSNYNLTGTAKGTGPIN-----SF 77

Query: 426 ARSHFKNY 403
           +R HF NY
Sbjct: 78  SRKHFPNY 85


>At3g24560.3 68416.m03086 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 456

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
 Frame = -1

Query: 462 YQEINLAKQKETARSHFKNYQALTKLRKQATLSHGEYDIRALSDRTFY-LVRSLPTHDTY 286
           Y  I L ++ ET R   K  +      K   L HG  +I A SD+    L ++L   + +
Sbjct: 286 YTTIGLLQRDETKRFLTKTEE------KSVELEHGT-NIAASSDKVHLCLGQNLYFMNRF 338

Query: 285 VLLFNVSERR-----------DTVDLGRVPHLTLPATVYVSSIHSARLAGHEITSSQLSL 139
           ++ +N+S+ +            T     V H+  P  +Y++ +     + H I+SSQ +L
Sbjct: 339 LIRWNLSDHQCNEADCRNCPVSTATSMEVRHMVEPDWLYLAELSKCSTSNHSISSSQKAL 398

Query: 138 EA 133
            +
Sbjct: 399 RS 400


>At3g24560.2 68416.m03084 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 660

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
 Frame = -1

Query: 462 YQEINLAKQKETARSHFKNYQALTKLRKQATLSHGEYDIRALSDRTFY-LVRSLPTHDTY 286
           Y  I L ++ ET R   K  +      K   L HG  +I A SD+    L ++L   + +
Sbjct: 490 YTTIGLLQRDETKRFLTKTEE------KSVELEHGT-NIAASSDKVHLCLGQNLYFMNRF 542

Query: 285 VLLFNVSERR-----------DTVDLGRVPHLTLPATVYVSSIHSARLAGHEITSSQLSL 139
           ++ +N+S+ +            T     V H+  P  +Y++ +     + H I+SSQ +L
Sbjct: 543 LIRWNLSDHQCNEADCRNCPVSTATSMEVRHMVEPDWLYLAELSKCSTSNHSISSSQKAL 602

Query: 138 EA 133
            +
Sbjct: 603 RS 604


>At3g24560.1 68416.m03085 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 462

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
 Frame = -1

Query: 462 YQEINLAKQKETARSHFKNYQALTKLRKQATLSHGEYDIRALSDRTFY-LVRSLPTHDTY 286
           Y  I L ++ ET R   K  +      K   L HG  +I A SD+    L ++L   + +
Sbjct: 292 YTTIGLLQRDETKRFLTKTEE------KSVELEHGT-NIAASSDKVHLCLGQNLYFMNRF 344

Query: 285 VLLFNVSERR-----------DTVDLGRVPHLTLPATVYVSSIHSARLAGHEITSSQLSL 139
           ++ +N+S+ +            T     V H+  P  +Y++ +     + H I+SSQ +L
Sbjct: 345 LIRWNLSDHQCNEADCRNCPVSTATSMEVRHMVEPDWLYLAELSKCSTSNHSISSSQKAL 404

Query: 138 EA 133
            +
Sbjct: 405 RS 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,761
Number of Sequences: 28952
Number of extensions: 265517
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)