Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l02f
(665 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 2e-33
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 91 7e-19
SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_47322| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29) 29 2.6
SB_43442| Best HMM Match : BNR (HMM E-Value=0.00033) 28 5.9
SB_10786| Best HMM Match : PA (HMM E-Value=2.4e-16) 28 5.9
>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 139 bits (336), Expect = 2e-33
Identities = 64/127 (50%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Frame = +1
Query: 277 GVDAIWMSPIFESPMVDFGYDISNFYDIHYEYGTMEDFEELLDKAHELGLKVLLDFVPNH 456
GV I++SPIF+SPMVD GYD+S+F D++ +GTMEDFE LL H G+K+LLDFVPNH
Sbjct: 64 GVKIIYLSPIFKSPMVDNGYDVSDFMDVNPMFGTMEDFESLLQDIHSRGMKLLLDFVPNH 123
Query: 457 ASNESEYFIKSEA-REPGYENFFIWADPLPNPENPGVRLPPSNWVSQFGGSAWEWSEKRQ 633
S++ ++F++S + R ++IW D + PP+NW+S FGGSAW K
Sbjct: 124 TSDQHDWFLESRSNRHNPRREWYIWRDAASD------GTPPNNWLSVFGGSAWSLDRKTN 177
Query: 634 QYYLHQF 654
QYYLHQF
Sbjct: 178 QYYLHQF 184
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 91.1 bits (216), Expect = 7e-19
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 3/223 (1%)
Frame = +1
Query: 1 DSRTAATMRATKVVVLVVGSIALLGLVAGFITWVVLSNQNAPTPPPTEVIQLD--WWKNC 174
D A + V+V+ G + L +VA + +V AP +V +D W +N
Sbjct: 599 DEEVAKYSKTRMVLVVFFGLVILAMIVAAVVIIIV-----APKCAKAKVRDMDKSWLENE 653
Query: 175 VLYQIYPRSFXXXXXXXXXXXXXXXXELKHFVDAGVDAIWMSPIFESPMVDFGYDISNFY 354
V+Y+I + F +L + + GV + + +F +
Sbjct: 654 VVYKISAQQFNKNLTGIID-------KLGYLENLGVKVLSIGAVFSE---------EDLQ 697
Query: 355 DIHYEYGTMEDFEELLDKAHELGLKVLLDFVPNHASNESEYFIKSEAREPGYE-NFFIWA 531
D++ G MEDF+ LL KAH+ ++V++DFVPNH S ++++F +S + + N+++W
Sbjct: 698 DVNNALGKMEDFQNLLKKAHDRKMRVIVDFVPNHTSKKNKWFEESSVNKTNSKRNWYVWR 757
Query: 532 DPLPNPENPGVRLPPSNWVSQFGGSAWEWSEKRQQYYLHQFAI 660
D +NW S GGSAWE K QYYLHQF++
Sbjct: 758 D------------SANNWPSMNGGSAWEKDPKTNQYYLHQFSV 788
>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 328 FGYDISNFYDIHYEYGTMEDFEELLDKAHELGLKVLLDFVPNHAS 462
FGY +++F+ YGT ++ L+D AH G+ VLLD V +HA+
Sbjct: 361 FGYQVTSFFAASSRYGTPDELRLLIDTAHSYGIVVLLDIVHSHAA 405
>SB_47322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 325 DFGYDISNFYDIHYEYGTMEDFEELLDKAHELGLKVLLDFVPNHAS---NESEYFIKS 489
DFG D + I +G+ + L++ AH +KV D V NH S +ES F S
Sbjct: 4 DFG-DFNQNGTIETRFGSKTELTNLIETAHNENMKVFADIVINHNSGGQSESNPFTNS 60
>SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 265 FVDAGVDAIWMSPIFESPMVDFGYDISNFYDIHY-EYGTMEDFEELLDKAHELGLKVLLD 441
F+D V A+ + D G N D Y +YG M + HE+ L++LL
Sbjct: 276 FLDGAVQAVADGGVLLVTCTDMGVLCGNHNDACYGKYGGMSLKAKF---CHEMALRLLLS 332
Query: 442 FVPNHASNESEYFI 483
+ +HA+ Y +
Sbjct: 333 SIESHANRYKRYIL 346
>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
Length = 1130
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/118 (21%), Positives = 46/118 (38%)
Frame = +1
Query: 253 ELKHFVDAGVDAIWMSPIFESPMVDFGYDISNFYDIHYEYGTMEDFEELLDKAHELGLKV 432
E+ V A V A+ +SP++ FG + + ++ + + + A G +
Sbjct: 511 EVNRLVIAQVPAVLISPVYPLGFETFGALVGHQVELCVNMTSATNLSIVWRNASVDGEVI 570
Query: 433 LLDFVPNHASNESEYFIKSEAREPGYENFFIWADPLPNPENPGVRLPPSNWVSQFGGS 606
FVPN + Y I PG ++ A + N V + +N ++ GS
Sbjct: 571 WEGFVPNSLDEYTIYRINHSLSTPGRYEIYVQASNAISSVNTTVAVLITNGITGLLGS 628
>SB_43442| Best HMM Match : BNR (HMM E-Value=0.00033)
Length = 510
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +1
Query: 553 NPGVRLPPSN---WVSQFGGSAWEWSEKRQQYY 642
NPG L +N WVS+ GG W+ + K YY
Sbjct: 338 NPGAALMAANIGIWVSRNGGYDWKQALKGPHYY 370
>SB_10786| Best HMM Match : PA (HMM E-Value=2.4e-16)
Length = 270
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 493 AREPGYENFFIWADPLPNPENPGVRLPPSNWVSQFG 600
A E G +++DP +PE PG P + W+ G
Sbjct: 54 ASEAGAIGLLLYSDPDSSPEGPGKVYPDAYWLPPTG 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,711,714
Number of Sequences: 59808
Number of extensions: 424299
Number of successful extensions: 1209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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