Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l01f
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   34   0.084
SB_48404| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.59 
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 220 VESDEDFVQMLEKESSGGWVCAGAVDSVQNGLQLSISLSGFDGASGSH 77
           V  DED VQ+++ +   G + AG +    N +  +    GFDG++ S+
Sbjct: 226 VLQDEDVVQVVKNDDDSGGIVAGGLGVTGNNVAAAAGGDGFDGSNDSY 273


>SB_48404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 391 ISAWLVHVHNDLNERSGLAWCDWSN-DNRGGHDWLSDS 281
           +S W+ H+HND+N   G    D S  D R  H W   S
Sbjct: 134 LSQWMCHLHNDVNRYIGKEEFDCSKVDERWLHGWKDGS 171


>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 265 REVDDFGSEDRLLYGVESDEDFVQMLEKESSGGWVCAGAVDSV 137
           R VD+ G  DRL + + S+  F Q+ ++  S  +V     DSV
Sbjct: 538 RPVDNQGLSDRLNFSLRSNTHFSQLRQRSQSPNFVIHHYADSV 580


>SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 367 HNDLNERSGLAWCDWSNDNRGGHDWLSDSTTVGKREVDDFGSED 236
           H +  E+   ++  W  + + G    SD T  G  ++DD+G+ED
Sbjct: 113 HEEFAEQGDGSYVGW--ERQPGDGCFSDITEEGDSDLDDYGNED 154


>SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 286 DSTTVGKREVDDFGSEDRLLYG 221
           D+ T+G R+V D  +EDR +YG
Sbjct: 283 DNITIGDRQVYDITTEDRQVYG 304


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 11/153 (7%)
 Frame = -3

Query: 427 LVNNDGLGNDSCISAWLVHVHNDLNERSGLAWCDWSNDNRGGHD-------WLSDSTTVG 269
           L  +DG  +D  I   L     D ++  G    D + DN+G  D       ++ D     
Sbjct: 134 LAESDGHDDDHLILRALTESDGDGDDNKGDGDDDDNYDNKGDGDDYDDYDNYVDDGDDDN 193

Query: 268 KREVDDFGSEDRL--LYGVESDEDFVQMLEKESSGGWVCAGAVDSVQNGLQLSISLSGFD 95
             + DD  + +R+  LYG + D +  +  E E +      G  DS+ +GL+ S S +  D
Sbjct: 194 DNKDDDDDAYERVSDLYGSKEDREDREEREDEPTAP---DGDDDSLNDGLEKSDSENEMD 250

Query: 94  GASGSHSYDS--NESNEEFHF*ILLFACNDQTD 2
                   +   +E  EE  F   L+  + +T+
Sbjct: 251 ETIEPEKEEGRPDEPEEEEPFEETLYVPDKETE 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,022
Number of Sequences: 59808
Number of extensions: 267459
Number of successful extensions: 637
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)