Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k24r
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.86 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   2.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 228  STWQPSLDTNEVTPTCVIWPSSSITVRGPPLSP*QVD 338
            +T +P+  +    PT   WP+   T+  P +   +VD
Sbjct: 1061 TTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPEVD 1097



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 411  WWPTTSVRPFSPPPFARLATTT 346
            WW +T+  P+      R  TTT
Sbjct: 1042 WWSSTTTSPWWTTTTTRRTTTT 1063


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = -3

Query: 285 AKSHK*ESLRSCPAKAATWIYLQVLSGPGT--TSTGLRRSPV*ISIGHRAHQKHPRQRKR 112
           +++H   S++S  ++AA   Y    SG  T  TSTGLRR+   + IG +     P   + 
Sbjct: 89  SRAHIHCSVKSESSQAAK--YGGCFSGESTVLTSTGLRRNLSSLQIGEKIQALDPSTNEL 146

Query: 111 LVQQKHPTRQRRPTLRTCFFNINI 40
           +  +        P+ +  F +I +
Sbjct: 147 VFSEVLLFLDYNPSQKRQFLHITL 170


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 255 SCPAKAATWIYLQVLSGPGTTSTGLRRSPV*ISIGHRAHQKHPRQRKRLVQQKH 94
           SC  +AA      VL GP  +     +S     +GH   ++HP+  +   QQ+H
Sbjct: 135 SCKLQAAAVTQNGVL-GPTGSPPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQH 187


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 255 SCPAKAATWIYLQVLSGPGTTSTGLRRSPV*ISIGHRAHQKHPRQRKRLVQQKH 94
           SC  +AA      VL GP  +     +S     +GH   ++HP+  +   QQ+H
Sbjct: 137 SCKLQAAAVTQNGVL-GPTGSPPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQH 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,552
Number of Sequences: 336
Number of extensions: 4048
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)