Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k24r
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    51   8e-07
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    40   0.002
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    38   0.006
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    38   0.010
AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf (tbp-asso...    31   1.2  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    28   6.2  
Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U50311-1|AAA92307.1|  492|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 2/151 (1%)
 Frame = -2

Query: 619 HDIGLIDFGRK-IEFNDYIQPIRLQRSADKNRNYDNVRLVAXXXXXXXXXXXSPENLNWV 443
           HDI +++     IEFN+Y QPI L     K+  Y   R              + E L   
Sbjct: 116 HDIAILEIPYPGIEFNEYAQPICLP---SKDFVYTPGRQCVVSGWGSMGLRYA-ERLQAA 171

Query: 442 FLNGISNLRCMVAYNFSPTIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGV 263
            +  I+   C+ +     ++  S  C  GY +    +CQGDSGGP     EDG     GV
Sbjct: 172 LIPIINRFDCVNSSQIYSSMSRSAFCA-GYLEGGIDSCQGDSGGPFACRREDGAFVLAGV 230

Query: 262 TSFVSSEGC-HVDIPSGFIRPGHYLDWFKTV 173
            S+   +GC     P  +     YL W   +
Sbjct: 231 ISW--GDGCAQKKQPGIYTMVAPYLSWISAI 259


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
 Frame = -2

Query: 430 ISNLRCMVAYNF----SPTIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGV 263
           IS+  C+  + F    S  I    IC   Y      T  GDSGGPL +   +G+  Q+G+
Sbjct: 191 ISDDDCVKTWRFLSLLSVKITGYQICAGAY---LHGTAPGDSGGPLLIHKSNGEYVQIGI 247

Query: 262 TSFVSSEGCH--VD---IPSGFIRPGHYLDWFKTVTG 167
           TS+  ++G    +D    P  + R   Y+ W + V G
Sbjct: 248 TSY-GADGLDGVIDQGKFPGVYTRISKYVPWIQGVIG 283


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -2

Query: 370 ICTLGYNDTTQS---TCQGDSGGPLTVIDED-GQITQVGVTSFVSSEGCHVDIPSGFIRP 203
           IC    N +  S   TC GDSGG L   D++ G+   + +TSF  + GC  ++ + F R 
Sbjct: 219 ICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSF-GTRGCPSNMLARFTRV 277

Query: 202 GHYLDWFKTVTGL 164
             YL+     TG+
Sbjct: 278 DMYLNLICNYTGV 290


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 430 ISNLRCMVAYNFSPTIQ-PSTICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGVTSF 254
           +S L C    N+   I  PS +C  GY+     +CQGDSGGPL +   DG     GV S+
Sbjct: 204 LSTLFCSSLPNYIGRIHLPSMLCA-GYSYGKIDSCQGDSGGPL-MCARDGHWELTGVVSW 261


>AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 4
           protein.
          Length = 523

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 207 GPGTTSTGLRRSPV*ISIGHRAHQKHPRQRKRLVQQKHP 91
           GPG  S    + PV   +GH+  Q HP    + +QQ+HP
Sbjct: 257 GPGGPSPMGLQGPVRGPMGHQMVQMHPPPPPQQIQQQHP 295


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 388 TIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDG 284
           T      C LGY+D T   CQ + G P +++ ++G
Sbjct: 552 TCSTGYFCHLGYDDATTVCCQSE-GDPCSLVVKEG 585


>Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical
           protein R07B7.3 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -3

Query: 267 ESLRSCPAKAATWIYLQVLSGPGTTSTGLRRSPV*ISIGHRAHQKHPRQRKRLVQQKHPT 88
           + +R  P K    +  Q+++ P   S  +RR+P       +  Q  P+QR+ ++ Q   +
Sbjct: 173 QHVRQAPVK----VVRQIITAP-VQSQVIRRAPQ-----QQVRQNRPQQRRNVIIQSQQS 222

Query: 87  RQRRPT 70
           R+ RPT
Sbjct: 223 RRFRPT 228


>Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical
           protein K03B8.3 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -2

Query: 394 SPTIQPSTICTLGYNDTT---QSTCQGDSGGPLTVIDEDGQITQVGVTSFVSSEGCHVD 227
           +P+     IC LGY        S    D+G PL V D+  ++  VG+ +F S   C ++
Sbjct: 276 NPSKCSECICPLGYGGVLCDRPSLIGKDTGLPLEVKDKIIEVKVVGIDNFFSYPTCLIN 334


>U50311-1|AAA92307.1|  492|Caenorhabditis elegans Hypothetical
           protein C25E10.5 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
 Frame = +1

Query: 70  CRSPLTCRVLLLY------QALPLSRVLLVCSVSN 156
           C   L+C VLLLY      Q LP  +V LVC++++
Sbjct: 318 CFGVLSCVVLLLYIFCRLGQILPQQKVFLVCTIAS 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,966,825
Number of Sequences: 27780
Number of extensions: 394166
Number of successful extensions: 1171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)