Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k24f
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         28   0.85 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    26   3.4  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    26   3.4  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   6.0  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 223 GVDSSHSTDHTNRELVRELAFTRLPS*YNSRTRQGTVA 110
           GV++ HS   T  E+ + L  TR P+  +S+ +  ++A
Sbjct: 227 GVEAGHSMQGTQEEIAKYLGITRGPTKMDSQAKYASLA 264


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 129 VLELYQDGRRVKASSLTSSRFVWSVLWEESTPAEPPSF 242
           +L + ++  R  A  LTS  FV S +W  ST   P SF
Sbjct: 113 ILAVARNFNRAVALHLTSVLFVNSGMWSASTSFLPSSF 150


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 242 HSNWGLTAAHCTGL 283
           H+NWG+T A  TGL
Sbjct: 338 HANWGITQAPATGL 351


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 341 FETTKYINHPEYSENLNVVQPHDIGLIDFGRKIEFNDYIQPI 466
           FE  K+IN+    +NL +V+      + +  KI +     P+
Sbjct: 33  FEKNKFINYQRIKDNLEIVKKRLNRPLTYSEKILYGHLDDPV 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,138
Number of Sequences: 5004
Number of extensions: 41971
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)