Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k24f
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 28 4.6
06_03_0561 - 22183140-22183185,22183273-22183442,22183554-221836... 28 4.6
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509... 28 4.6
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 28 6.1
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 28 6.1
01_04_0120 + 16242220-16242483,16242538-16243424,16244604-162452... 28 6.1
12_02_0189 + 15165485-15168694 27 8.1
>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 51 RSSEVRRSPTTPISLSLKSLATVPCRV-LELYQDGRRVKASSLTSSRFVWSVLWEESTPA 227
R+S++ P+ + + C+ L L +DG V SS SS+F + LW A
Sbjct: 1072 RNSKLAEFPSRESTQEKLFICCARCKTALGLQEDGFLVSCSSSLSSKFYLTYLWRHGPSA 1131
Query: 228 E 230
+
Sbjct: 1132 D 1132
>06_03_0561 -
22183140-22183185,22183273-22183442,22183554-22183619,
22183911-22184010,22184072-22184164,22184259-22184352,
22185029-22185257,22185460-22185556,22187406-22187710
Length = 399
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 370 RMIYVLSGLEEQAGAGQVHCSSSDDD 293
R+ Y GL++ G G+VH + SDDD
Sbjct: 318 RLGYKSVGLDKGRGKGKVHATPSDDD 343
>03_05_0382 +
23649597-23649645,23649675-23649735,23650784-23650937,
23651019-23651149,23651239-23651315,23651439-23651477,
23651976-23652067,23652140-23652277,23652385-23652549
Length = 301
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 179 QLSIRMVSTVGGVNACGATIIHSNWGLTAAHCTGL 283
++S + +VGGV + + + + WGL+ HC G+
Sbjct: 13 EISQGLPDSVGGVLSGPVSNVATRWGLSDLHCKGM 47
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 133 RTRQGTVASDFRESEIGVVGERLTSDERDQKYHNSPVSHF 14
R + V ++F + +GE LT D ++ YH +P + F
Sbjct: 91 RGERKRVPNEFIDELASFLGENLTVDYEERHYHGTPQNSF 130
>04_04_1242 -
32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/53 (20%), Positives = 24/53 (45%)
Frame = -2
Query: 319 VHCSSSDDDCYTQTGAVSSCEPPVAMNDGGSAGVDSSHSTDHTNRELVRELAF 161
V+C + + + G + EP + +++ G + + DH N+ +E F
Sbjct: 777 VNCLEGESAIFGENGTAVTGEPNILLHENGHPNMRAVFWVDHRNKNQSKEARF 829
>01_04_0120 +
16242220-16242483,16242538-16243424,16244604-16245264,
16245582-16245943,16246071-16246140,16246666-16246740
Length = 772
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 325 GQVHCSSSDDDCYTQTGAVSSCEPPVAMNDGGSAGV-DSSHSTDHTNRELVRE 170
GQ S + T G S+C+PP N G+ G+ + STD ++E+ E
Sbjct: 199 GQPDSSIENVKAITTRGGKSTCDPPYP-NPAGTNGMPKETSSTDSADKEIQPE 250
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 313 CSSSDDDCYTQTGAVSSCEPPVAMNDGGSAGVDSSHSTDHTNRE 182
CS SDD+ V S E AM+ G D++ S D R+
Sbjct: 978 CSESDDEDSDSESVVDSGEDDGAMDGSEDDGGDAAESWDEMERK 1021
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,413
Number of Sequences: 37544
Number of extensions: 329651
Number of successful extensions: 975
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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