Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k24f
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    48   5e-08
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.71 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   2.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.6  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   8.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.7  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   8.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 48.4 bits (110), Expect = 5e-08
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
 Frame = +2

Query: 131 SRIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHC----TGLRVTII 298
           SRIV G      +FP    I+     G +  CGATII   + LTAAHC       ++ I+
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLAIV 216

Query: 299 VRA---GAVNLTRPGLLFETTKYINHPEYS-ENLNVVQPHDIGLIDFGRKIEFNDYIQP 463
           V      +   T   +L    K I HP+Y     +  Q +DI L+   + I+F D + P
Sbjct: 217 VGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGP 275


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 114 TVPCRVLELYQDGRRVKASSLT 179
           T P + + LYQDGR + +S LT
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLT 125


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP + S+P PP   LR
Sbjct: 99  NNRPVYISQPRPPHPRLR 116



 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP + S+P PP   LR
Sbjct: 155 NNRPVYISQPRPPHPRLR 172



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 43  NNRPVYIPQPRPPHPRLR 60



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 71  NNRPVYIPQPRPPHPRLR 88



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 127 NNRPVYIPQPRPPHPRLR 144



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 183 NNRPVYIPQPRPPHPRLR 200



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 211 NNRPVYIPQPRPPHPRLR 228



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 239 NNRPVYIPQPRPPHPRLR 256


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 236 IIHSNWGLTAAHCTGLRVTIIVRAGAVNLTRPGLLFETTKYINH 367
           +++  W +         V+II+    + L   GLL   ++Y+NH
Sbjct: 394 LLNFGWQMICLIVVIALVSIIMYIAFIILQYAGLLRNRSEYLNH 437


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 325  GQVHCSSSDDDCYTQTG 275
            G+ H S  DD  Y QTG
Sbjct: 1610 GKGHGSDKDDVVYQQTG 1626


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 256 AHSCSLHRFACNN 294
           A+ C LHR AC++
Sbjct: 126 ANHCELHRAACHS 138


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 44  NNRPVYIPQPRPPHPRLR 61



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 72  NNRPVYIPQPRPPHPRLR 89



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 100 NNRPVYIPQPRPPHPRLR 117


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 44  NNRPIYIPQPRPPHPRLR 61



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 72  NNRPIYIPQPRPPHPRLR 89



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 100 NNRPVYIPQPRPPHPRLR 117



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 126 NNRPVYIPQPRPPHPRLR 143


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 137 IVSGWEASEGQFPYQLSIRMVSTVGGVNACGATI 238
           I+ GWE +   FP ++  ++         CG  I
Sbjct: 123 IIDGWELNGEVFPSKMDHQLPLKQRSSEFCGKNI 156


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 15  NNRPVYIPQPRPPHPRLR 32



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 43  NNRPVYIPQPRPPHPRLR 60



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 71  NNRPVYIPQPRPPHPRLR 88



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 99  NNRPVYIPQPRPPHPRLR 116



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 127 NNRPVYIPQPRPPHPRLR 144



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP +  +P PP   LR
Sbjct: 155 NNRPVYIPQPRPPHPRLR 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,933
Number of Sequences: 438
Number of extensions: 3370
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)