Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k24f
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to...    31   0.73 
At5g51400.1 68418.m06372 expressed protein contains Pfam profile...    29   1.7  
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ...    29   2.9  
At1g16590.1 68414.m01987 mitotic spindle checkpoint protein, put...    29   2.9  
At1g16445.1 68414.m01967 methylase-related similar to YtqB (GI:2...    29   2.9  
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    28   3.9  
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ...    27   9.0  
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ...    27   9.0  
At5g13280.1 68418.m01525 aspartate kinase identical to aspartate...    27   9.0  
At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein ...    27   9.0  

>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
           homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
           thaliana]
          Length = 723

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -2

Query: 319 VHCSSSDDDCYTQTGAVSSCEPPVAMNDGGSAGV-DSSHSTDHTNRELVRE 170
           V  SSSDDD + +T  +   E   + ++G +  +  SS++ DHT+++L+R+
Sbjct: 536 VPTSSSDDDDWDKTARMGK-EDSESEDEGDTVPLKQSSNAEDHTSKKLIRK 585


>At5g51400.1 68418.m06372 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 241

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 79  VGERLTSDERDQKYHNS-PVSHFSYD 5
           V E   S +RDQ +HNS PVSH S D
Sbjct: 210 VQEMSASGDRDQHHHNSVPVSHHSSD 235


>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
           protein similar to ssRNA-binding protein [Dictyostelium
           discoideum] GI:1546894; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 245

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 165 ASSLTSSRFVWSVLWEESTPAEPPSFIATGGSQLLTAPVCV*QSSSELEQ*T*PAPACSS 344
           +SS +SS++ ++     S P +PP   A   S  + APV     ++   Q   P PA  +
Sbjct: 10  SSSSSSSQYTYAANSYYSAPYQPPQPYAAAPSPAVPAPVASIPGATVYPQPVGPVPAVYA 69

Query: 345 RP 350
            P
Sbjct: 70  YP 71


>At1g16590.1 68414.m01987 mitotic spindle checkpoint protein,
           putative similar to Mad2B protein [Homo sapiens]
           gi|4835900|gb|AAD30290
          Length = 215

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 356 YINHPEYSENLNVVQPHDI 412
           Y+ HP  SE LN+V P D+
Sbjct: 192 YLEHPSLSEPLNLVNPEDV 210


>At1g16445.1 68414.m01967 methylase-related similar to YtqB
           (GI:2952524) [Streptococcus mutans]
          Length = 274

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 290 TIIVRAGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGL 418
           T+     A  + +PG L     YI HP   E L VV+    GL
Sbjct: 203 TLSALKAAERILKPGGLISLVVYIGHPGGREELEVVEAFGSGL 245


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
            PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
 Frame = -2

Query: 310  SSSDDDCYTQTGAVSSCEPPVAMNDGGSAGVDSSHSTDHTNRELVRELAFTRLPS*YNSR 131
            SS  ++ YTQ  + S   P        S   DSS S D ++ EL + ++F        SR
Sbjct: 731  SSIRNELYTQKASNSDKRP-------SSIPPDSSSSDDESDMELPKRVSFRYQEKRTESR 783

Query: 130  TRQGTVASDFRESEI-GVVGERLTSDERDQKYHNSPVSHFSYDY 2
            TR   + S     ++   +  R ++  +D++ H +  +  S  Y
Sbjct: 784  TRPTHLHSGVSHKDLEEEIPTRASTRSQDRRTHKTTPASASASY 827


>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1072

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 210 EESTPAEPPSFIATGGSQLLTAPVCV 287
           EE    E    + +GG++LLT P C+
Sbjct: 165 EECLKEEEGGIVGSGGTRLLTQPACI 190


>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1069

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 210 EESTPAEPPSFIATGGSQLLTAPVCV 287
           EE    E    + +GG++LLT P C+
Sbjct: 165 EECLKEEEGGIVGSGGTRLLTQPACI 190


>At5g13280.1 68418.m01525 aspartate kinase identical to aspartate
           kinase [Arabidopsis thaliana] GI:4376158
          Length = 569

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 66  RRSPTTPISLSLKSLATVPCRVLELYQDGRRVKASSLTSSR-FVWSVLWEESTPA 227
           R SPT PISL+     T+    L +  DG  ++  S + SR  V +VL E+ T A
Sbjct: 24  RNSPTLPISLNRVDFPTLKKLSLPI-GDGSSIRKVSGSGSRNIVRAVLEEKKTEA 77


>At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein
           (FLA10)
          Length = 422

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 56  VGGQALADDTDFTFPEIARDRSLPGSRIVSGWEASEGQFPYQLSI 190
           +G     + TD    ++    + PGS++ S +  S  Q PY +S+
Sbjct: 121 LGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYNISV 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,032,486
Number of Sequences: 28952
Number of extensions: 237923
Number of successful extensions: 668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)