Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k23r
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 201 4e-52
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 200 5e-52
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 199 1e-51
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 199 1e-51
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si... 35 0.039
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 30 1.5
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 1.9
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 29 2.6
At5g19400.1 68418.m02312 expressed protein 28 4.5
At4g03180.1 68417.m00435 expressed protein 28 4.5
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 5.9
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 5.9
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 28 5.9
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 27 7.8
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 201 bits (490), Expect = 4e-52
Identities = 95/192 (49%), Positives = 128/192 (66%)
Frame = -2
Query: 618 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 439
+V +G K +V+D R H+LGRLA+V+AK LL G +VVVRCE+I +SG R K+K M
Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60
Query: 438 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 259
FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG NAL RL+ ++G P P+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120
Query: 258 XXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 79
V L+ G YC +GRLS E+GW + D +++LE+KRK +A +K+L
Sbjct: 121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLS 180
Query: 78 RITKDAGEKVSK 43
++ A EKV++
Sbjct: 181 KLRAKA-EKVAE 191
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 200 bits (489), Expect = 5e-52
Identities = 95/184 (51%), Positives = 124/184 (67%)
Frame = -2
Query: 618 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 439
+V +G +K +V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG R K+K M
Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60
Query: 438 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 259
FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG AL RL+ Y+G P P+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120
Query: 258 XXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 79
V L+ G YC +GRLS E+GW + D +++LE KRK +A V YE+K K
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERA--HVVYERK-K 177
Query: 78 RITK 67
++ K
Sbjct: 178 QLNK 181
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 199 bits (485), Expect = 1e-51
Identities = 98/194 (50%), Positives = 130/194 (67%), Gaps = 2/194 (1%)
Frame = -2
Query: 618 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 439
+V +G K +V+DGR H+LGRLA+ AK LL G +VVVVRCE+I +SG R K+K M
Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60
Query: 438 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 259
FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG AL RL+ ++G PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120
Query: 258 XXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 79
V L+ G YC +GRLS E+GW + D +++LE KRK ++ +V YE+K K
Sbjct: 121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERS--QVMYERK-K 177
Query: 78 RITK--DAGEKVSK 43
++ K EKV++
Sbjct: 178 QLNKLRTKAEKVAE 191
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 199 bits (485), Expect = 1e-51
Identities = 94/184 (51%), Positives = 125/184 (67%)
Frame = -2
Query: 618 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 439
+V +G +K +V+D R H+ GRLA++IAK LL G VVVVRCE+I +SG R K+K M
Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60
Query: 438 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 259
FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG AL RL+ ++G PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120
Query: 258 XXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 79
V L+ G YC +GRLS E+GW + D +++LE KRK ++ + YE+K K
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERS--QALYERK-K 177
Query: 78 RITK 67
++TK
Sbjct: 178 QLTK 181
>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
similar to ribosomal protein L13 GI:170132 from
[Spinacia oleracea]
Length = 241
Score = 35.1 bits (77), Expect = 0.039
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = -2
Query: 582 VIDGRGHLLGRLAAVIA-----KVLLE-------GNKVVVVRCEQINISGNFFRNKLKLM 439
V+D +LGRLA+ IA K L G V+VV E++ +SG KL
Sbjct: 107 VVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRR 166
Query: 438 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 265
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 167 HSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -2
Query: 609 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 448
M G++N IDG H+ G A++ + K+ V++ + I++SG R L
Sbjct: 286 MLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGL 339
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 341 IMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEM 478
++ L + H LD + W+G + LH LR+ D+S S+ LK+LP++
Sbjct: 655 LIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 501 VVRCEQINISGNFF-RNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGM 343
V C Q+ + + R K+ + L +R N+ P+R +HF SK L + GM
Sbjct: 277 VFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGM 330
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 67 LGDPLKFLFIGNSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRH 246
L P F F G + + + F N NF+ ++ T + ++Q + T SSRH
Sbjct: 1000 LNGPANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRH 1057
Query: 247 YNTSTV 264
++T+ V
Sbjct: 1058 FDTAHV 1063
>At4g03180.1 68417.m00435 expressed protein
Length = 185
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -2
Query: 135 EDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 43
+DKRKGK+ KR+ E K+ T++ E+V K
Sbjct: 97 DDKRKGKSNKRIGVEDLYKQ-TREEMERVRK 126
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 609 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 448
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 609 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 448
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 6 HRIG*W**MVLSP---STPSHQHPW*SS*VSFHRQLS*QPCPSSCLQAYEQ 149
HRIG +L P + SH+HP S SF ++ Q C C+Q+Y Q
Sbjct: 403 HRIGIDIRCILVPDHFTHESHEHPLFIS-TSFKAEIRCQGCQKECMQSYLQ 452
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 396 PFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 280
P + PS L K + ++P + +G +R +T+DGC
Sbjct: 14 PLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGC 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,465,503
Number of Sequences: 28952
Number of extensions: 303173
Number of successful extensions: 907
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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