Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k23f
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.037
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 31 0.80
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 29 2.4
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2) 29 4.2
SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14) 29 4.2
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0) 28 5.6
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43) 28 7.4
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34) 28 7.4
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06) 27 9.8
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_42304| Best HMM Match : NHL (HMM E-Value=0) 27 9.8
>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 44.8 bits (101), Expect = 6e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +2
Query: 290 MIPHKTERGKNALRRLRTYDGCPPPFD 370
MIPHKT++G A+ R++ +DG PPP+D
Sbjct: 1 MIPHKTKKGTEAMNRMKVFDGVPPPYD 27
>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 35.5 bits (78), Expect = 0.037
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Frame = +2
Query: 53 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKLKLM 196
+IDGR + GRLA I ++L G+ VVV+ + I +SG + NKL
Sbjct: 20 LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKLYRH 79
Query: 197 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 367
H + ++ILW+ V GM+P K ++RL ++ P+
Sbjct: 80 HTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP-KNNLRPTWMKRLYLFEDEHHPY 135
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 57 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLG 179
SM+V +C ++W + P F +L+W+ N S++ SLG
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLG 303
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 422 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 595
PG C VG+L H W + R L R+ + ++ A + + +G+ S++
Sbjct: 866 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAAAGGRTADQGERSGDSASRS 923
>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 456 PMKLDGNTVMLFVSLKTRGRARLL--RELPMKRNLRGSPRMLVRR 584
P K +GNT V ++ GR + L R +P++ N G P+ LV+R
Sbjct: 1114 PGKAEGNTDKRIVPVENNGRIKQLDKRIIPVENN--GRPKQLVKR 1156
>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
Length = 622
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 422 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 538
PG C VG+L H W + R L R+ + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445
>SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)
Length = 271
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 413 CLKPGRNYCHVGRL---SHEIGWKYRDVVRKL--EDKRKGKAVKRVAYEKKLKRITKDAG 577
C KPG+++ HV + H ++ D R + + K A+K +Y KLK + +D G
Sbjct: 106 CYKPGQDFLHVVHVLNRPHIFSSRHHDAYRAIIHDVNEKANALKD-SYISKLKALVQDEG 164
>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 621
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 273 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTT 130
H + AL+W+G R FTL + + + LS + K + + C ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577
>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
Length = 443
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 470 WKYR-DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTP 604
W+ R V++ E K+K + + +A KK+K+ K + + SK + P
Sbjct: 378 WRLRAGVLQAAEMKKKRQKAQSLAERKKIKKEKKKSNPRRSKCSVP 423
>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
Length = 225
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 234 RAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTL 124
R G+ + + ++ ++ LFL PE++ R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167
>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
Length = 672
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 11 RFVV--KMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGN 124
R+V+ + +G +NK ++IDG L A +V+++GN
Sbjct: 601 RYVISGQHSGTTNKRVIIDGNDMLSPHSVATNKRVIIDGN 640
>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2337
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +2
Query: 116 EGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARG-PFHFRAPSKILWKTVRGM 292
+G+ V+ IN+ N ++ LR V R + + ++T+ +
Sbjct: 837 QGHSTCKVKGLHINLRTGDIVNLTSMLELLRVEGAVAEERHVTLPYTIQRNVHYRTLHTV 896
Query: 293 IPHKTER---GKNALRRLRTYDGCPPP 364
HKT R K R +RTY PPP
Sbjct: 897 PAHKTFRFVYNKRVRRGMRTYPYAPPP 923
>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
Length = 1279
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 573 LVRRCRRRQHHSLPSSNPMD 632
LV+R QHH+LPS +P D
Sbjct: 1192 LVKRIAGMQHHNLPSPHPED 1211
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,034,064
Number of Sequences: 59808
Number of extensions: 442350
Number of successful extensions: 1904
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1901
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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