Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k21r
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...   161   4e-40
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    51   8e-07
Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    28   8.3  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    28   8.3  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score =  161 bits (392), Expect = 4e-40
 Identities = 93/253 (36%), Positives = 132/253 (52%), Gaps = 3/253 (1%)
 Frame = -2

Query: 755 GLDTYEMAIIMRNLMRRLGYTQYYIQGGDFGHMIGSHIATIFPSEVLGFHTNF-PANXXX 579
           G      A + R LM RLGY ++Y+QGGD+G +I S +  ++P  V+  H N  PA    
Sbjct: 199 GFSQLACARVFRKLMLRLGYNKFYLQGGDWGAIITSLLTKVYPQNVMALHLNMMPAMPGA 258

Query: 578 XXXXXXXXXXXXW-PSYFGNGIEDRMYPLKDKLEFYLEETGYSHLQSTKPDTIGIVLTDS 402
                         PS   +    + +    K    + ETGY HLQ+TKPDT G  L DS
Sbjct: 259 NALGTFYDILGWLIPSTLSSKEIQKTHNPFSKFGLLIVETGYMHLQATKPDTAGTSLNDS 318

Query: 401 PVALGSYILDRFMIFTNHTNKFEDEGGIDKYYDFDKLLDNIMLYWASGSITTSLRIYKET 222
           P+ L +YI+++F  +TN  N+   +GG++K +  D+LL  +M+YW +G+I +S R Y+E 
Sbjct: 319 PIGLAAYIIEKFSTWTNTENRALPDGGLNKRFTNDELLTIVMIYWTNGNIVSSQRFYREM 378

Query: 221 FAGSRLNNLAQVPTSVPTWALRLKYELFQH-PDYMLRWKYTNLLGSTNLDYGGHFAAFER 45
           F   R   L +   S PT       EL+   P  + R  Y N+   T +D  GHFAAFE 
Sbjct: 379 FLDRRCEALGKRYVSTPTAHASGLNELYDRTPIEVSRHSY-NITHYTEIDM-GHFAAFEA 436

Query: 44  PKDFSDDVFKAVK 6
           PK  +  VFK VK
Sbjct: 437 PKPLAQSVFKFVK 449


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 10/260 (3%)
 Frame = -2

Query: 755 GLDTYEMAIIMRNLMRRLGYTQYYIQGGD-FGHMIGSHIATIFPSEVLGFHTNFPANXXX 579
           G +    A I+  LM RL    Y++ G + +G  + + +++++P+ + G H +   N   
Sbjct: 199 GFNAIATARIIAKLMYRLNLNNYFVHGTEGYGSDVATLLSSLYPTRIAGLHLS---NPFV 255

Query: 578 XXXXXXXXXXXXWPSYFGNGIEDRMYPL-----KDKLEFYLEETGY----SHLQSTKPDT 426
                            G   EDR         KD  +   +   Y         T    
Sbjct: 256 NPTFSTFTLAKYALKAMGQKDEDRENQENRETGKDNRDQMTDLADYFKQDKFAYPTNSQA 315

Query: 425 IGIVLTDSPVALGSYILDRFMIFTNHTNKFEDEGGIDKYYDFDKLLDNIMLYWASGSITT 246
            G    +SP     YI  R+       + F  E  +++ +  D++   I LYW + ++ +
Sbjct: 316 FGAAFLNSPSGTAKYIESRW----KQLSTFFAETNLNELFTMDEIATEIYLYWLTDTLPS 371

Query: 245 SLRIYKETFAGSRLNNLAQVPTSVPTWALRLKYELFQHPDYMLRWKYTNLLGSTNLDYGG 66
           +L I   +F    +   +QV   +PT     K   ++    +L  +Y NL   + L  GG
Sbjct: 372 ALTILDSSFNFESVWLSSQV--RIPTAVSYSKQTPWRCSKDILEDRYLNLTRISELPKGG 429

Query: 65  HFAAFERPKDFSDDVFKAVK 6
            F   +     ++D+F  V+
Sbjct: 430 MFHHLQDGHKIAEDIFSFVE 449


>Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical
           protein C11E4.4 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 677 GGDFGHMIGSHIATIFPSEVLGFHTNF 597
           GG FG  +G  I T+    + GFH+ F
Sbjct: 85  GGQFGFFLGLSIITLIQMVLYGFHSAF 111


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 92  PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 265
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 505 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 564

Query: 266 PNITLCCPVT 295
                  P+T
Sbjct: 565 SAQAFVDPIT 574


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 92  PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 265
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 468 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 527

Query: 266 PNITLCCPVT 295
                  P+T
Sbjct: 528 SAQAFVDPIT 537


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 92  PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 265
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 505 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 564

Query: 266 PNITLCCPVT 295
                  P+T
Sbjct: 565 SAQAFVDPIT 574


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 92  PRG*CTSNEAYS--LGVGKARISNEAPMLELKLGPEPDYSTSNLRRSPCKSSVTWLYSRR 265
           P G C  +E     L  G +  SN     E +L    D   + L    C SS+ WL  + 
Sbjct: 207 PPGSCIVDEVTKDLLNGGSSNSSNATDRDETRLETTEDMQMNGLLPGDCNSSIQWLNQQS 266

Query: 266 PNITLCCPVT 295
                  P+T
Sbjct: 267 SAQAFVDPIT 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,024,277
Number of Sequences: 27780
Number of extensions: 430346
Number of successful extensions: 1282
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)