Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k21f
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    28   1.4  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    27   2.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.2  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   7.4  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   9.7  
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr...    25   9.7  
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.7  

>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 444 VHSDAFAQFFSHWIFKYKFRERVKFLNKYDHFLTNIQG 557
           V    + +FF H     + +E VK LN   +F+TN  G
Sbjct: 457 VFQKPYVEFFVHPSLLNELKETVKKLNSVSYFVTNKNG 494


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 336 VIFSDAMESEIRALFEDYRLMERKIKSFKNTAWTYGVHSD 455
           +I S  ME  IRALFE Y L + +  S +  +    VH D
Sbjct: 98  IILSSGMEPFIRALFEQY-LGKEEASSIEIVSNDINVHPD 136


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 150 LVFGVFSKIISYLFVVKALFTIYGIYLVYVSLT 248
           L+F V+  IIS   V   + T YG YLV  SLT
Sbjct: 13  LLFFVYLLIISTRLVAADMNTQYGCYLVDSSLT 45


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 219 GIYLVYVSLTNVPDLPKVDVNLRWGVDNNTHDTRIRPYRVIFSDAMESEIRALFEDY 389
           G+ + +V   NV  +P+   +L     NN+      PYR+   D  E E+ +    Y
Sbjct: 235 GLDIKFVDYGNVYGVPEHTSSLSLKETNNSDAGYTEPYRLYNVDLFEYEVDSPMSQY 291


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 174 IISYLFVVKALFTIYGIYLVYVSLTNVPDLPKVDVN 281
           ++ + F++ ALF  +G YLV + +   PD+    VN
Sbjct: 71  LMIFFFIIPALFGAFGNYLVPL-MIGAPDVAYPRVN 105


>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 210 TIYGIYLVYVSLTNVPDLPK 269
           TI G Y +YVS++N  DL K
Sbjct: 26  TIDGAYRIYVSVSNNKDLKK 45


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 368 DFRFHRVTKYHPVG 327
           +F  H V KYHP G
Sbjct: 124 EFEMHHVEKYHPAG 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,251
Number of Sequences: 5004
Number of extensions: 48018
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)