Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k21f
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_42541| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 297 DNNTHDTRIRPYRVIFSDAMESEIRALFEDYRLMERKIK 413
           D N  +     Y V  S+A   ++ ++FE+YR M R+++
Sbjct: 802 DMNAEEPEDNTYDVETSEAYNYQVSSIFEEYRFMPRQVE 840


>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 386 LPSHGEEDKELQKHGLDLWRSFRCVCTVLL 475
           LP+  E+ K   KHGLDL R + C C +L+
Sbjct: 158 LPAAREDFKTCAKHGLDL-RFYCCTCELLM 186


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 231 VYVSLTNVPDLPKVDVNLRWGVDNNTHDTRIRPY 332
           VY S   +P +PK   N  +  DN TH T+  P+
Sbjct: 172 VYSSAMGLPRIPKKKKNTFYHNDNKTHSTQTGPW 205


>SB_42541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 659 KFSNRTWPAVQK*KGYHLNIFISFRLNTNKMYIQTLNISQEMIV 528
           K  N ++PA +     +L IF+S + NT K+Y    +IS+ MIV
Sbjct: 35  KHENNSFPAAKSTN--NLQIFVSLKKNTLKVY-SDKSISKNMIV 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,367
Number of Sequences: 59808
Number of extensions: 330081
Number of successful extensions: 825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)