Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k21f
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    82   3e-16
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    71   6e-13
U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat debr...    31   0.96 
AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat debran...    31   0.96 
Z74038-6|CAA98496.1|  423|Caenorhabditis elegans Hypothetical pr...    28   6.8  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    28   6.8  
AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 39/118 (33%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
 Frame = +3

Query: 312 DTRIRPYRVIFSDAMESEIRALFEDYRLMERKIKSFKNTAWTYGVHSDAFAQFFSHWIFK 491
           +T I+P++V    ++  +++   ++ R+    ++   +  + YG +S    +   +W+ K
Sbjct: 46  NTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDD--FYYGFNSKQLLKLRDYWLNK 103

Query: 492 YKFRERVKFLNKYDHFLTNIQGLDIHFVRVK-PKADKNVKVVPLLLLHGWPGSVREFY 662
           Y +R++   +N++  F T I+GL +HF+ VK PK+ KNVK  P+L+ HGWPG+V EFY
Sbjct: 104 YDWRKQEATINQFPQFKTEIEGLQVHFLHVKPPKSYKNVK--PILVAHGWPGNVFEFY 159


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
 Frame = +3

Query: 180 SYLFVVKALFTIYGIYL-VYVSLTNVPDLPKVDVNLRWGVDN-NTHDTRIRPYRVIFSDA 353
           S+ F    + +I+ I L +Y+   + P L ++D +  W +D+    D  I  + +   D 
Sbjct: 3   SWFFFSVVVISIFSILLSIYIHKPDFPPL-EIDPDDYWKLDDPEKDDDTIYSFTI---DI 58

Query: 354 MESEIRALFEDYRLMERKIKSFKNTAWTYGVHSDAFAQFFSHWIFKYKFRERVKFLNKYD 533
            ESE+    E       K++S +     Y  + D +       +  + +++   FLN + 
Sbjct: 59  KESEVSNFKE-------KLESERFLPTLYDTNYDNYLNELKQVLLGFNWKQHQHFLNTFK 111

Query: 534 HFLTNIQGLDIHFVRVK-PKADKNVKVVPLLLLHGWPGSVREFY 662
            + T I+GL IHF+RV  P  DK  +VVPLL+ HG+PGS  +F+
Sbjct: 112 QYKTEIEGLKIHFLRVSTPPKDKKSRVVPLLIFHGFPGSFWDFF 155


>U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat
           debranching enzyme protein.
          Length = 500

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 471 FSHWIFKYKFRERVKFLNKYDHFLTNIQGLDIHFVRVKPKADKNVKV---VPLLLLHGWP 641
           FS   F++   ER  F  +      +++ +D+  +R + K+D   K+   + ++L H WP
Sbjct: 167 FSQGDFQFSHYERPSFSERDVKSAYHVRNVDMFRLR-QLKSDNENKISNPIDIMLSHDWP 225

Query: 642 GSVREF 659
           G + +F
Sbjct: 226 GGIPDF 231


>AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat
           debranching enzyme relatedprotein 1 protein.
          Length = 500

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 471 FSHWIFKYKFRERVKFLNKYDHFLTNIQGLDIHFVRVKPKADKNVKV---VPLLLLHGWP 641
           FS   F++   ER  F  +      +++ +D+  +R + K+D   K+   + ++L H WP
Sbjct: 167 FSQGDFQFSHYERPSFSERDVKSAYHVRNVDMFRLR-QLKSDNENKISNPIDIMLSHDWP 225

Query: 642 GSVREF 659
           G + +F
Sbjct: 226 GGIPDF 231


>Z74038-6|CAA98496.1|  423|Caenorhabditis elegans Hypothetical
           protein F58B4.5 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +3

Query: 363 EIRALFEDYRLMERKIKSFKNTAWTYG-----VHSDAFAQFF 473
           E+  +++DY    + IK+FKNT   +G      HSD ++  F
Sbjct: 241 EMLKIYKDYYFQPQMIKNFKNTCQFFGYKPVLTHSDLWSSNF 282


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 359 FHRVTKYHP-VGPYSGVVRVIIDAPS*IDVDFGQIRNVRQRHVHQINTVNR 210
           F R   Y   +G Y    + II+APS ++       +    H H+INT+NR
Sbjct: 62  FEREMAYRTEMGLYYSYYKTIINAPSFLEGVQEITHDTVTEHGHEINTLNR 112


>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 228 LVYVSLTNVPDLPKVDVNLRWGVDNNTHDTRIRPYRV 338
           + Y   T++   P  + N  +G+DN  H +  +PYR+
Sbjct: 248 ITYDKYTDIIGTPGKETNFWFGLDNMNHLSGAKPYRL 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,179,990
Number of Sequences: 27780
Number of extensions: 258406
Number of successful extensions: 606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)