Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k20r
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.44 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   7.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 232  KQPEAASSKPEQQQPREQ 179
            +QP+  S +P+QQQP+ Q
Sbjct: 1515 QQPQQQSQQPQQQQPQPQ 1532



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 232  KQPEAASSKPEQQQPREQ 179
            +QP+    + +QQQP++Q
Sbjct: 1503 QQPQQQQQQQQQQQPQQQ 1520



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 235  AKQPEAASSKPEQQQPREQ 179
            ++QP+    +P+QQQ ++Q
Sbjct: 1521 SQQPQQQQPQPQQQQQQQQ 1539



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 250  TKTGPAKQPEAASSKPEQQQPREQMV 173
            T T   +QP+    + +QQQ ++Q +
Sbjct: 1442 TLTSAPQQPQQQQQQQQQQQQQQQQL 1467



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 229  QPEAASSKPEQQQPREQ 179
            QP+    + +QQQP++Q
Sbjct: 1530 QPQQQQQQQQQQQPQQQ 1546


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 235 AKQPEAASSKPEQQQPREQMVPIVTSP 155
           A Q       P QQQ  +Q   +VTSP
Sbjct: 213 ASQQSQPGMHPRQQQQAQQHQGVVTSP 239


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 576 GLKYEFLKSEVEGNELMEDN 635
           G+K   + S+VEGN + E+N
Sbjct: 214 GVKNNHVSSKVEGNGVHEEN 233


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 24  YKPNSFKSDRCSSLANNGQ 80
           YK N  K D+CS+  +NG+
Sbjct: 144 YKSN-LKCDKCSTYQSNGE 161


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 349 VNDLVSTLSSDGVLTVTAPKRPPPNAGERIVPITKT 242
           VN+ V   S + VLTVTAP       G  I P T+T
Sbjct: 289 VNNSVGGESVETVLTVTAP------LGAEIEPSTQT 318


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 621 LMEDNRSSFFRPMPKCWSSSL 683
           L   N ++FFR M + W ++L
Sbjct: 338 LTRQNPAAFFRGMMQAWMTAL 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,544
Number of Sequences: 438
Number of extensions: 4069
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)