Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k16r
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.29
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 26 2.0
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 2.0
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 2.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 3.5
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 4.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 6.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 6.1
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 6.1
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 25 6.1
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 29.1 bits (62), Expect = 0.29
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 314 INVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPE 204
I+ N P+ A+ P+ E + EEPLP LP PE
Sbjct: 80 ISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPE 116
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 8 HLDHHFCIFIYNYTGTIARISVSWL 82
H HH + YT + R S+SWL
Sbjct: 145 HCYHHGATAVLVYTQIVGRTSISWL 169
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 207 RKYG-SGENNNFGQRLFGNVLN--INGISGNLGRTVHVDDDLDEGSA 338
R+YG G N + L ++N + G +L RTV+V+ D+DE A
Sbjct: 461 RRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHL-RTVYVEHDIDESEA 506
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 2.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 308 VNRPSEIAADPVDVEDIAEEPLPEVVILPTPV 213
++ P++ A+ V E E+P+P V+ P PV
Sbjct: 200 LSSPTQGASSNVTPESPPEKPIPSFVLSPPPV 231
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 3.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 129 GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNING 278
GT Y + FG+ + G + DF G +N + ++ GNV ++G
Sbjct: 762 GTMPYNNNKFGQPQQGYMSQSGFNDFPPIFGGHSNVYNRQQPGNVSGMSG 811
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -2
Query: 341 DGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFP 207
DG P + + P+E P + IA P+P ++ P P
Sbjct: 524 DGLPRYEEATRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTP 568
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 6.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 185 RVQERRFQEIREWGE*QLRAKALRQCPQHQRDQRQSRK 298
R QER ++IRE + + + K L+ + +R +R++ +
Sbjct: 582 RKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAER 619
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 296 SEIAADPVDVEDIAEE 249
+ +AAD +D+EDI+EE
Sbjct: 1084 ASLAADNMDIEDISEE 1099
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 6.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 341 DGTPLVQIIINVNRPSEIAADPVDVEDIAEE 249
D L+Q++ N N PS AA V + E+
Sbjct: 383 DSAQLIQLVENRNNPSVAAASNVAADQSTED 413
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 VHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVN 413
+HVD + +GSA+ + R++ DGL VN
Sbjct: 248 LHVDHETGDGSAVGRAILLDDVIDRLRNSPDGLENVN 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,056
Number of Sequences: 5004
Number of extensions: 24426
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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