Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k16r
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0587 - 34921535-34922041,34922579-34922689 33 0.068
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 31 0.48
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 30 0.84
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 29 1.9
10_08_0215 - 15939842-15940056,15940235-15940913 27 4.5
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879... 27 4.5
12_02_1076 - 25862671-25863159,25863290-25863451,25863614-258638... 27 5.9
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 27 5.9
12_02_0619 - 21276591-21276719,21276798-21276920,21277425-212775... 27 5.9
09_04_0179 - 15366119-15366916 27 5.9
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711... 27 5.9
06_01_0892 - 6827510-6827590,6829348-6830412 27 5.9
04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595... 27 5.9
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 27 5.9
12_02_0651 + 21522089-21522128,21522472-21522593,21523386-215235... 27 7.8
08_01_0202 - 1638978-1639571 27 7.8
04_04_0680 - 27217563-27220088 27 7.8
02_03_0258 - 16930027-16930485,16930686-16930991 27 7.8
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 27 7.8
>03_06_0587 - 34921535-34922041,34922579-34922689
Length = 205
Score = 33.5 bits (73), Expect = 0.068
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 81 SVEGLGKSDS-GSRDDR-GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQ 245
S +G G+ D G RDDR G G +G DR G+ + R+ D YG G + + +
Sbjct: 143 SGDGGGRGDRYGGRDDRYGGGGGGGGRYGSDRGGDRYSGRSRDGGGYGGGGGDRYSR 199
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 30.7 bits (66), Expect = 0.48
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 153 RQARNCWYPYHPGSRCHSSRDPQLSQLTD 67
R+ R C++P+ PG R + P++ +L D
Sbjct: 521 RRPRRCFFPFSPGVRVGAMSSPEIQKLAD 549
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.9 bits (64), Expect = 0.84
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 401 EPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAAD 279
E ++ GP EGA + VTGADG+ L +I +P E+ D
Sbjct: 151 EHVNPGPGDGEGATIPVTGADGSGL---LIEGAQPVEMDVD 188
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 28.7 bits (61), Expect = 1.9
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Frame = +3
Query: 108 SGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSG----ENNNFGQRLFG--NVLN 269
S ++ + YG FG G G D SG + + G+R N +
Sbjct: 1326 SNPKNGDDNSGYGRGGFGRGNRGRGRGRNFGDSGSSWSGGSYRNDESRGERSEDRWNTRD 1385
Query: 270 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD 395
+G G GR D ++G+ +GD++ T+ +GR NRD
Sbjct: 1386 SDGGRGR-GRGHFGRGDRNQGNNYGSGDNNDRTWGSGRGNRD 1426
>10_08_0215 - 15939842-15940056,15940235-15940913
Length = 297
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +3
Query: 210 KYGSGENNNFG-QRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRS 386
+YGSG +G FG+ G G + +G AGDS RG + G
Sbjct: 225 RYGSGGGGGYGGPNRFGHGFGSGVGIGEAGNQYGDEYAKSKGDGGGAGDSARGGYGEGLG 284
Query: 387 NRDG 398
+ G
Sbjct: 285 HGSG 288
>01_01_1111 -
8791925-8792649,8793506-8793890,8794341-8794618,
8794998-8795163
Length = 517
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 374 VEGAPVTVTGADGTPLVQIIINVNRPSE 291
VE APVTV DG I N+ PS+
Sbjct: 202 VEAAPVTVAEPDGVTTSAITANIPSPSD 229
>12_02_1076 -
25862671-25863159,25863290-25863451,25863614-25863838,
25863939-25864037,25864584-25864992,25865094-25865221,
25865955-25866329
Length = 628
Score = 27.1 bits (57), Expect = 5.9
Identities = 31/106 (29%), Positives = 40/106 (37%)
Frame = +3
Query: 90 GLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLN 269
G G+S G D G FG G GF + F + G G +G FG+
Sbjct: 533 GFGRSSGGGFGDSG--------FGRSGGG---GFGDSGFGRSGGG---GYGDSGFGSSGG 578
Query: 270 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVG 407
+G SG GR+ D G+S G+F N N G G
Sbjct: 579 GSGRSG-FGRSGGFGDSGSGRFGGGFGNSGSGSFGNFGGNNSGQSG 623
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 162 PRSRQARNCWYPYHPGSRCHSSR 94
P S + NCWY H C +SR
Sbjct: 146 PGSTRCYNCWYSGHIARNCPTSR 168
>12_02_0619 -
21276591-21276719,21276798-21276920,21277425-21277535,
21277887-21277901,21279117-21279188
Length = 149
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 413 VDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIA 255
V T + G A+ + + GAD V+I++ + I D +DIA
Sbjct: 79 VKTQLALPEGTAVTGESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIA 131
>09_04_0179 - 15366119-15366916
Length = 265
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +3
Query: 78 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 248
GS G G + SG + G N +GE GE +G N YG G GQR
Sbjct: 138 GSGHGAG-TGSGYGEGHGEGNGFGSGYGEGH-GEGYGEGNGSGSGYGEGHGEGHGQR 192
>07_03_1050 -
23570785-23570824,23570938-23571004,23571114-23571196,
23572028-23572201,23572268-23572471,23572570-23573300
Length = 432
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 252 FGNVLNINGISGNLGRTVHVDDDLDEGSAISAGD 353
FG V N + I N+ + H DDLDE SA D
Sbjct: 389 FG-VTNEHYIGNNMKKKSHRSDDLDEASAYEDSD 421
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +3
Query: 102 SDSGSRDDRGTNNYGLDDFG----EDRAGEL-HGFRNVDFRKYGSGENNNFGQR 248
S GSR +G YG +G E+ G +G R + YG G +G++
Sbjct: 238 SGYGSRPQQGGEEYGSGGYGRKAQEESYGSAGYGGRKTEEESYGGGSGYGYGKK 291
>04_04_1224 +
31858110-31858338,31859180-31859301,31859398-31859507,
31859661-31859725,31859940-31860004,31860387-31860632,
31861212-31861313,31861484-31861534,31862015-31862105,
31862777-31862841
Length = 381
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 404 YEPISVGPAIVEGAPVTVTGADGTPLVQI 318
Y P+ VGPA + +P VTG +V +
Sbjct: 297 YHPMQVGPAYISPSPQPVTGGKFNHVVYV 325
>04_01_0422 +
5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 27.1 bits (57), Expect = 5.9
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Frame = +3
Query: 78 GSVEGLGKSD------SGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRK-YGSGENNN 236
G EG+GK G G G+ + G +G ++ GSG + +
Sbjct: 597 GCKEGIGKGKFLKYGAGGGAGHGGRGGIGIYNGMRSEGGPQYGSADLPCELGSGSGSSES 656
Query: 237 FGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVG 407
G ++ + + L + L GS S G+SHRGT N G +G
Sbjct: 657 TDNTAGGGLIVVGSMKWPLSKL------LIYGSLSSDGESHRGTKKNSNGTYKGGIG 707
>12_02_0651 +
21522089-21522128,21522472-21522593,21523386-21523544,
21523653-21523730,21523821-21523865,21524121-21524187,
21524261-21524322,21524407-21524546,21524752-21524878,
21524957-21525071,21525210-21525298,21525533-21525616,
21525857-21526219,21526300-21526689,21526835-21526894,
21527530-21527553
Length = 654
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 282 SGNLGRTVHVDDDLDEGSAISAGDSHR 362
S NL TVH D++L + AG+ R
Sbjct: 616 SNNLSNTVHADNELHSTRRVLAGEQSR 642
>08_01_0202 - 1638978-1639571
Length = 197
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 255 GNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 398
G+V+ + SGN GRT VD G A++ G G + G G
Sbjct: 49 GDVVEFSVGSGNDGRTKAVDVTAPGGGALTGGSRPSGGGDRGYGGGGG 96
>04_04_0680 - 27217563-27220088
Length = 841
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 171 PCPPRSRQARNCWYPYHPGSRCHSSRD 91
PC P +R + C+ H G R + RD
Sbjct: 277 PCTPATRSSVRCYASAHSGVRVSAMRD 303
>02_03_0258 - 16930027-16930485,16930686-16930991
Length = 254
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 164 GQGWGAPRVQERR 202
G GWG PR+Q RR
Sbjct: 64 GDGWGRPRLQRRR 76
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 165 DRAGELHGFRNVDFRKYGSG-ENNNFGQRLFGNVL 266
DRA ELH R+ DF SG ++ G+R G+V+
Sbjct: 113 DRALELHTTRSWDFLDVQSGLRSDRLGRRASGDVI 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,168,251
Number of Sequences: 37544
Number of extensions: 198063
Number of successful extensions: 889
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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